View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_15 (Length: 441)
Name: NF3728_high_15
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 45341946 - 45342084
Alignment:
| Q |
23 |
aatcccaatcctgtagtaacggtacgcataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatag |
122 |
Q |
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| T |
45341946 |
aatcccaatcctgtaataacggtacgcataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatag |
45342045 |
T |
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| Q |
123 |
cataacaacaccactacactgaaacaacgattcaatcat |
161 |
Q |
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| T |
45342046 |
cataacaacaccactacactgaaacaacgattcaatcat |
45342084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 45342116 - 45342160
Alignment:
| Q |
156 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttg |
200 |
Q |
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| T |
45342116 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttg |
45342160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 45342214 - 45342272
Alignment:
| Q |
254 |
gtgatgacggtgaaaaggacgataacacgttgcggttccatgtgaaggtttcttagagta |
313 |
Q |
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| T |
45342214 |
gtgatgacggtgacaatgacgacaacacgttgcggttccatgtgaagg-ttcttagagta |
45342272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 417
Target Start/End: Original strand, 45342337 - 45342376
Alignment:
| Q |
378 |
tgtgtcataatatatatatcacatatcacatcatgtgata |
417 |
Q |
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| T |
45342337 |
tgtgtcataatatatatatcacacatcacatcatgtgata |
45342376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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