View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_17 (Length: 421)
Name: NF3728_high_17
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 49274402 - 49273998
Alignment:
| Q |
1 |
taatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacattcatagatgttttgaagtttcaatacatttaaggaccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
49274402 |
taatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacattcgcagatgttttgaagtttcaatacatttaaggatcata |
49274303 |
T |
|
| Q |
101 |
atgacaccacctctcacattaagggaccaatagattgtttactcattatttacatcaaatcataatgaaattaattctttttattttatacatatcctat |
200 |
Q |
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| T |
49274302 |
atgacaccatctctcacattaagggaccaataggttgtttactcattatttgcatcaaatcataatgaaattaattctttttattttatacatatcctat |
49274203 |
T |
|
| Q |
201 |
ggtgctaagcattgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgat |
300 |
Q |
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| T |
49274202 |
ggtgctaagcattgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgat |
49274103 |
T |
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| Q |
301 |
tcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccctt |
400 |
Q |
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| T |
49274102 |
tcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccctt |
49274003 |
T |
|
| Q |
401 |
tgact |
405 |
Q |
| |
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||||| |
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| T |
49274002 |
tgact |
49273998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 211 - 400
Target Start/End: Original strand, 49255441 - 49255630
Alignment:
| Q |
211 |
attgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctcta |
310 |
Q |
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| T |
49255441 |
attgtggctcaacttggggaagttactgagtttacttggccaagaccctttgatttcacaagaagctggaaaatttgctatgtgcatgattcctgctctt |
49255540 |
T |
|
| Q |
311 |
tttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccctt |
400 |
Q |
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|||||||||||||| |||||||||| |||| |||||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||| |
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| T |
49255541 |
tttgcttatgcaactcttcaggcactggtcagatactttcttatgcaaagtttggttcttcctcttgttataagttcctctgttaccctt |
49255630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 223 - 399
Target Start/End: Original strand, 49268177 - 49268353
Alignment:
| Q |
223 |
cttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgca |
322 |
Q |
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|||||| | ||||| || ||||||||| ||||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||| |
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| T |
49268177 |
cttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaattttccatgtgcatgattcctgctctatttgcttatgca |
49268276 |
T |
|
| Q |
323 |
acacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccct |
399 |
Q |
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|| |||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| |
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| T |
49268277 |
acgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccct |
49268353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 281 - 401
Target Start/End: Original strand, 49273259 - 49273379
Alignment:
| Q |
281 |
aaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgtta |
380 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||| ||||| ||| | |||||| |
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| T |
49273259 |
aaatatgttatgggcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgtta |
49273358 |
T |
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| Q |
381 |
taggttcctctgttacccttt |
401 |
Q |
| |
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||| |||||| ||||||||| |
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| T |
49273359 |
tagagtcctctattacccttt |
49273379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 269 - 402
Target Start/End: Original strand, 29356746 - 29356879
Alignment:
| Q |
269 |
caagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatat |
368 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | || | || |||| ||||||||||||||||||||||||| |
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| T |
29356746 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatag |
29356845 |
T |
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| Q |
369 |
ttcctgttgttataggttcctctgttaccctttg |
402 |
Q |
| |
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||| | |||||||| |||| ||||||| ||||| |
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| T |
29356846 |
ttcatcttgttataacttccactgttacactttg |
29356879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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