View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_high_19 (Length: 387)

Name: NF3728_high_19
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_high_19
NF3728_high_19
[»] chr8 (2 HSPs)
chr8 (13-369)||(299093-299448)
chr8 (112-366)||(301256-301514)
[»] chr7 (1 HSPs)
chr7 (244-314)||(27465123-27465193)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 299448 - 299093
Alignment:
Q  13 atactaaactaaataaacaacatactgataattcaagtgcccatgaaccaaaagtgannnnnnncaaaaactgaaattgccccacagaaaaatctgaagc 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||    
T  299448 atacaaaactaaataaacaacatactgataattcaagtgcccatgaaccaaaagtgatttttt-caaaaactgaaattgcgccacagaaaaatctgaagc 299350  T
Q  113 tgttgaaaggaaaggggaaaccagttagtaatccatctaaaacatttgtacatgtacctaaattaacccaggcattagtcttcaacaaataaaaatattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  299349 tgttgaaaggaaaggggaaaccagttagtaatccatctaaaacatttgtacatgtacctaaattaacccaggcattagtcttcagcagataaaaatattc 299250  T
Q  213 caaacaaaacttcatataaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatg 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  299249 caaacaaaacttcatatgaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatg 299150  T
Q  313 gagtagtgtttctttcttcctttcttagattccacttgggcttgcctgatgactgtg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  299149 gagtagtgtttctttcttcctttcttagattccacttgggcttgcctgacgactgtg 299093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 112 - 366
Target Start/End: Complemental strand, 301514 - 301256
Alignment:
Q  112 ctgttgaaaggaaaggggaaaccagttagtaatccatctaaaacatttgtacatgtacctaaattaacccaggcattagtcttcaacaa-ataaaaatat 210  Q
    |||||||||||| | || |||| |||||||| || |||||||||| ||| | ||| ||| ||||||||||| |||||||| ||| | || ||||||||||    
T  301514 ctgttgaaaggagatggtaaactagttagtattcaatctaaaacagttgaatatgcacc-aaattaacccaagcattagttttccaaaatataaaaatat 301416  T
Q  211 tccaaacaaaactt-catataaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgcca 309  Q
    | ||||||||| || ||||||| || | ||||| || ||||||||||||| || ||||||||| || | |||||||||||| ||||||||||||| ||||    
T  301415 ttcaaacaaaaatttcatataaagaaggataatattgcctctgactccagttctttctccaaggtatagaccaaactggttccatcaattatgagtgcca 301316  T
Q  310 atggagtagtgtttctt---tcttcctttcttagattccacttgggcttgcctgatgact 366  Q
    |||||||||||||| ||   ||||| |||| || ||||||||||||| ||| ||||||||    
T  301315 atggagtagtgttttttttctcttcttttcctaaattccacttgggcatgcttgatgact 301256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 27465123 - 27465193
Alignment:
Q  244 ttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatgga 314  Q
    |||||||||||||||  ||||||||||| ||| ||||||||||  |  ||||||||||||| |||||||||    
T  27465123 ttacctctgactccaattccttctccaaaatataaaccaaactattcccatcaattatgagtgccaatgga 27465193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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