View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_24 (Length: 315)
Name: NF3728_high_24
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 40 - 255
Target Start/End: Original strand, 43867815 - 43868032
Alignment:
| Q |
40 |
ctattacagagaacatggccaacaagcacaataatgagataacaatgaatgtgttaaattctacaaa-tgtgaattaatgagtaaacagcagcatcaaga |
138 |
Q |
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| T |
43867815 |
ctattatagagaacatggccaacaagcacaataatgagataataatgaatgtgttaaactgtacaaaatgtgattgaatgagtaaagagcagcatcgtga |
43867914 |
T |
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| Q |
139 |
ttcatcagcaacattgtgaaaaaagataacaaaagaatgaaaa-caataaatcgcactatacctttcaaatcttctgccaaacctagatttggagtgttt |
237 |
Q |
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| T |
43867915 |
ttcatcagcaacattgtgagacaagatgacaaaagaaggaaaaacaataaatcgcactgtacctttcgaatcttctgcaaaacctagatttggagtcttt |
43868014 |
T |
|
| Q |
238 |
tggtgactgatggaatca |
255 |
Q |
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| T |
43868015 |
tggtgactgatggaatca |
43868032 |
T |
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