View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_26 (Length: 294)
Name: NF3728_high_26
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_26 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 10643152 - 10643361
Alignment:
| Q |
18 |
ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggca |
117 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10643152 |
ttttctgctatggtttgtttgtgcctcggctgggattggctttaaggtccatttaggcgtttttttaggtggtttaggcgtgtcagtatgttgtgtggca |
10643251 |
T |
|
| Q |
118 |
gcagctgcgtgctgttgctacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatatt |
217 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10643252 |
gcagctgcgtgctgttgctgcagcttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatgtatt |
10643351 |
T |
|
| Q |
218 |
atcttgattc |
227 |
Q |
| |
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|||||||||| |
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| T |
10643352 |
atcttgattc |
10643361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 32712686 - 32712458
Alignment:
| Q |
18 |
ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggca |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |
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| T |
32712686 |
ttttctgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgtttttttaggtggtttaggtgtgtcagtatgttgtatggca |
32712587 |
T |
|
| Q |
118 |
gcagctgcgtgctgttgc-------------------tacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtg |
198 |
Q |
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| T |
32712586 |
gcagctgcgtgctgttgcagcagctgcgtgctgttgctgcagcttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtg |
32712487 |
T |
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| Q |
199 |
gggcttgtgttaatatattatcttgattc |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32712486 |
gggcttgtgttaatatattatcttgattc |
32712458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 11682070 - 11682019
Alignment:
| Q |
18 |
ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccat |
69 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
11682070 |
ttttctgctatggtttgtctgtgcctcggctgggattgcctttagggtccat |
11682019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 29373284 - 29373336
Alignment:
| Q |
167 |
tcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattat |
219 |
Q |
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| T |
29373284 |
tcgttgcctcaccgtttagcatgtcttgtgccgggcttgtgttaatatattat |
29373336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 23923490 - 23923288
Alignment:
| Q |
25 |
ctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggcagcagctg |
124 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923490 |
ctatggtttgtctgtgcctcggcttggattggctttaaggtccatttaggcatttttttaggtggtttaggcgtgtcagtatgttgtgtggcagcagctg |
23923391 |
T |
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| Q |
125 |
cgtgctgttgctacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattatcttga |
224 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23923390 |
cgtgctgttgctgcaacttctgttttggcctcttttgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattatgttga |
23923291 |
T |
|
| Q |
225 |
ttc |
227 |
Q |
| |
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||| |
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| T |
23923290 |
ttc |
23923288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 3726 - 3935
Alignment:
| Q |
18 |
ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggca |
117 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3726 |
ttttctgctatggtttgtctgtgcctcggttgggattggctttaaggtccatttaggcgtttttttaggtggtttaggcgtgtcagtatgttgtgtggca |
3825 |
T |
|
| Q |
118 |
gcagctgcgtgctgttgctacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatatt |
217 |
Q |
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||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826 |
gcaattgcgtgctgttgctgcagcttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatatt |
3925 |
T |
|
| Q |
218 |
atcttgattc |
227 |
Q |
| |
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|| ||||||| |
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| T |
3926 |
attttgattc |
3935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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