View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3728_high_28 (Length: 281)
Name: NF3728_high_28
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 41738417 - 41738669
Alignment:
| Q |
16 |
cattgttcattattcaatgattggatcgtaattgaagattttacaaagttgagaacactataaaataatacaatttttcttaaggatcagcgaattttct |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41738417 |
cattgttcattattcaatgattgggtcgtaattgaagattttacaaagttgagaacactataaaataatacaatttttcttaaggatcaacgaattttct |
41738516 |
T |
|
| Q |
116 |
cttcaaattggattgcaccatttggtaaacagcaaaccaaccattttcccaaaagaatgaaagttctggtttatcacatacaacacttccacaaaacata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41738517 |
cttcaaattggattgcaccatttggtaaacagcaaaccaaccattttcccaaaagaatgaaagttctggtttatcacatacaacacttccacaaaacata |
41738616 |
T |
|
| Q |
216 |
cctcccacacaacatggttgcaacggattcatcacagtatacataatagagaa |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41738617 |
cctcccacacaacatggttgcaacggattcatcacagtatacataatagagaa |
41738669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 41747236 - 41747268
Alignment:
| Q |
217 |
ctcccacacaacatggttgcaacggattcatca |
249 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
41747236 |
ctcccacacaacatggttgcaatggattcatca |
41747268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University