View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_30 (Length: 251)
Name: NF3728_high_30
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 48019584 - 48019826
Alignment:
| Q |
9 |
agcacagagagggctgaaaaacctgcaatatgaataaatacattaaatataatttagtatttgagttattctactaccaaaactagaactgatttcatca |
108 |
Q |
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| T |
48019584 |
agcactgagagggctgaaaaacctgcaatatgaataaatacattaaatataatttagtatttgagttattctactaccaaaactagaactgatttcatca |
48019683 |
T |
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| Q |
109 |
aagaagctaaatgcattaaaagacactatgaaatttcatatgcatattctaccttccaaaaattccccagaatccaaaaaatccaatcattccttgaaca |
208 |
Q |
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| T |
48019684 |
aagaagctaaatgcattaaaagacactatgaaatttcatatgcatattctaccttccaaaaattccccagaatccaaaaaatccaatcattccttgaaca |
48019783 |
T |
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| Q |
209 |
aaagaagcaataagcaatgccccttgaatagctctcatggatt |
251 |
Q |
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| T |
48019784 |
aaagaagcaataagcaatgccccttgaatagctctcatggatt |
48019826 |
T |
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