View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_37 (Length: 238)
Name: NF3728_high_37
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36282575 - 36282796
Alignment:
| Q |
1 |
ttaaatgaaatctcaaccttcaaacatatgagagaaaactaaagttgaattactaagaaaagtcgtaggagcattttaaccatgtagattgaaaatggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36282575 |
ttaaatgaaatctcaaccttcaaacatatgagagaaaactaaagttaaattactaagaaaagtagtaggagcattttaaccatgtagattgaaaatggag |
36282674 |
T |
|
| Q |
101 |
aaaagtcgacaaaattttcatgagagaattgtaatcctcttcctctttgtgtacatgcctcttcatttcctaactaactnnnnnnnctctcctactttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
36282675 |
aaaagtcgacaaaattttcatgagagaattgtaatcctcttcctctttgtgtacatgcctcttcatttcctaactaattaaaaaaactctcctactttac |
36282774 |
T |
|
| Q |
201 |
attttacatatagctagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
36282775 |
attttacatatagctagtctat |
36282796 |
T |
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