View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3728_high_5 (Length: 763)
Name: NF3728_high_5
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 703; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 9 - 747
Target Start/End: Original strand, 38086389 - 38087127
Alignment:
| Q |
9 |
agcaaagggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086389 |
agcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca |
38086488 |
T |
|
| Q |
109 |
attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086489 |
attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag |
38086588 |
T |
|
| Q |
209 |
ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086589 |
ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg |
38086688 |
T |
|
| Q |
309 |
tgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttctttac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086689 |
tgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttctttac |
38086788 |
T |
|
| Q |
409 |
ttttttcagtttccaaaaggttctccacctgaagtgttgcttaacagaacacaagctacacttgatatattcaaagcaaaatctgattttgtgagaattc |
508 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086789 |
ttttttcagtttccaaaaggttctacacctgaagtgttgcttaacagaacacaagctacacttgatatattcaaagcaaaatctgattttgtgagaattc |
38086888 |
T |
|
| Q |
509 |
caattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatgga |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38086889 |
caattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatatggtggcaaaatgga |
38086988 |
T |
|
| Q |
609 |
tacaatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaa |
708 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086989 |
tactatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaa |
38087088 |
T |
|
| Q |
709 |
aagttgcacatcaattggattagaaaactttatagttat |
747 |
Q |
| |
|
| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38087089 |
acactgcacattaattggattagaaaactgtatagttat |
38087127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 747
Target Start/End: Original strand, 38072879 - 38073617
Alignment:
| Q |
9 |
agcaaagggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca |
108 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38072879 |
agcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatca |
38072978 |
T |
|
| Q |
109 |
attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag |
208 |
Q |
| |
|
| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||| ||||| ||| |
|
|
| T |
38072979 |
actgtaacggtgtttactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttag |
38073078 |
T |
|
| Q |
209 |
ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg |
308 |
Q |
| |
|
|||| |||||| ||| ||||||| || ||||||||||||||||| |||||||| |||||||| | ||||||| |||||||||| | |||||||| ||| | |
|
|
| T |
38073079 |
ccattaatattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaag |
38073178 |
T |
|
| Q |
309 |
tgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttctttac |
408 |
Q |
| |
|
||||||||| ||| |||||||| | |||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
38073179 |
tgtagataacctcttacccttgatggaagaaaagtttcctgaacttggtttggttagagaagattgtgttgaaatgagttggattgaatcagttctttac |
38073278 |
T |
|
| Q |
409 |
ttttttcagtttccaaaaggttctccacctgaagtgttgcttaacagaacacaagctacacttgatatattcaaagcaaaatctgattttgtgagaattc |
508 |
Q |
| |
|
|||||| ||||||| |||| |||| |||| |||||| |||||||||| |||| || |||| | |||||| |||||||||||||| | ||||| |
|
|
| T |
38073279 |
ctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaaggataattccaaagcgaaatctgattttgtcaaaattc |
38073378 |
T |
|
| Q |
509 |
caattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatgga |
608 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||| ||||||||||| ||| | |||||| | | ||| ||| |||||| || ||||||| |||||| |
|
|
| T |
38073379 |
ctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtattgtttccttatggtggcataatgga |
38073478 |
T |
|
| Q |
609 |
tacaatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaa |
708 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||| ||||| ||||| || |||||||| | || || ||||||||||||||||||||||||||| |
|
|
| T |
38073479 |
taagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcaatatgcagtgcactggcatcaagaaggtgatgaggtggaa |
38073578 |
T |
|
| Q |
709 |
aagttgcacatcaattggattagaaaactttatagttat |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38073579 |
aagttgcacatcaattggattagaaaactttatagttat |
38073617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 742
Target Start/End: Original strand, 38081964 - 38082694
Alignment:
| Q |
9 |
agcaaagggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca |
108 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| || |
|
|
| T |
38081964 |
agcaatgggtgaagattatttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagca |
38082063 |
T |
|
| Q |
109 |
attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag |
208 |
Q |
| |
|
| ||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||| |
|
|
| T |
38082064 |
acagtgacggtgtttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatag |
38082163 |
T |
|
| Q |
209 |
ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg |
308 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||||||| ||| ||| | | |||| | |||||||||| |||||||||||||| |
|
|
| T |
38082164 |
ccatcaatattgtctttcaaagg------ataaattcaagtaaaaaaggcgagacaa------caattctagctatatttcaagccttgtttcttggagg |
38082251 |
T |
|
| Q |
309 |
tgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttctttac |
408 |
Q |
| |
|
||||||||||||||| |||||| | | | |||||||||||| | ||| |||| |||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38082252 |
tgtagataaactcattcccttgatggatcaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttctttac |
38082351 |
T |
|
| Q |
409 |
ttttttcagtttccaaaaggttctccacctgaagtgttgcttaacagaacacaagctaca-------cttgatatatt--caaagcaaaatctgattttg |
499 |
Q |
| |
|
||||||| ||||| |||||| | |||||||||||||||||||||||||| |||| || | ||| |||| |||||||||||||||||||| |
|
|
| T |
38082352 |
ctttttcaatttccgaaaggtgcattacctgaagtgttgcttaacagaacactagctgcaaacagcccaagatttatttacaaagcaaaatctgattttg |
38082451 |
T |
|
| Q |
500 |
tgagaattccaattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtgg |
599 |
Q |
| |
|
||| || ||| |||||||||| |||||||||||| |||||| |||| ||| ||||||| ||| |||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
38082452 |
tgaaaactcccattcctgaaaatggattagaaggaatatggtctttgtttcatgaagaaggtgccaaaggtgcaatgatgatatggtttccttatggtgg |
38082551 |
T |
|
| Q |
600 |
caaaatggatacaatttcagagtctgaaattccatttcctcatagaagtggaaacttat-tcatgattcaatactcggttcattggcatcaagaaggtga |
698 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||| |||| ||||| ||| |||| ||||||| || |||||||| |
|
|
| T |
38082552 |
aataatggatactatttcagagtctgaaattccatttccacatagaaaaggaaatttatatcat-attcattaccaggttgattggcaacaggaaggtga |
38082650 |
T |
|
| Q |
699 |
tgaggtggaaaagttgcacatcaattggattagaaaactttata |
742 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
38082651 |
tgaggtggaaaaactgcacattaattggattagaaaactttata |
38082694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 745
Target Start/End: Complemental strand, 38061903 - 38061173
Alignment:
| Q |
9 |
agcaaagggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca |
108 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
38061903 |
agcaatgggtgaggattttttttgggctattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatca |
38061804 |
T |
|
| Q |
109 |
attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag |
208 |
Q |
| |
|
| |||| ||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||| | |||||||||| |||| |
|
|
| T |
38061803 |
agtgtgtcagtgttcaatgtgccaaaaacattggatcaaaatgcaacaaagcttgttcacaagtggcagtttgtgacaagtacaattgatgaaaacatag |
38061704 |
T |
|
| Q |
209 |
ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg |
308 |
Q |
| |
|
|||| || || ||| ||||||||||||||| ||||||||||||| ||||||| ||| | |||| || |||||||||||| |||||||||||| | |
|
|
| T |
38061703 |
ccatttatgttatcttgcaaagggtaaattt------aagtaaaaaaggtaagtcaaattcaacagtacaagctttatttcaagccttgtttcttggaag |
38061610 |
T |
|
| Q |
309 |
tgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttctttac |
408 |
Q |
| |
|
||||||||||||||| |||||| | |||| |||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38061609 |
tgtagataaactcattcccttgatgaaagaaaagtttccagaacttggtttggttagagaagattgtattgagatgagttggattgaatcggttctttac |
38061510 |
T |
|
| Q |
409 |
ttttttcagtttccaaaaggttctccacctgaagtgttgcttaacagaacacaagctacacttgatatattcaaagcaaaatctgattttgtgagaattc |
508 |
Q |
| |
|
||| | ||||| ||||| |||||||| ||||||| ||||||||||||||| || ||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
38061509 |
ctttatggatttccgaaaggcgaatcacctgaaatgttgctcaacagaacacaagctgcaaaggatattttcaaagtaaagtctgattttgtgagaattc |
38061410 |
T |
|
| Q |
509 |
caattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatgga |
608 |
Q |
| |
|
| ||| |||||| |||||||||| | || |||| | | ||| ||||||| ||| |||||||| ||||| || | ||||| || ||||||| |||| | |
|
|
| T |
38061409 |
ccatttctgaaattggattagaaagaatgtggcgtatgtttcatgaagatggtgccaaagattcaatggtgtatttttttccttatggtggcataatgaa |
38061310 |
T |
|
| Q |
609 |
tacaatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaa |
708 |
Q |
| |
|
|| |||||||||||| ||||||||||||| |||||| |||||| |||| | ||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38061309 |
taatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattttgtactcggttcattggcatcaagaaagtgatgaggtggaa |
38061210 |
T |
|
| Q |
709 |
aagttgcacatcaattggattagaaaactttatagtt |
745 |
Q |
| |
|
|| | | || ||||||||||||||||| ||||||| |
|
|
| T |
38061209 |
aaaattaaaatgaattggattagaaaactgtatagtt |
38061173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 9 - 735
Target Start/End: Original strand, 38058551 - 38059271
Alignment:
| Q |
9 |
agcaaagggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatca |
108 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38058551 |
agcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatca |
38058650 |
T |
|
| Q |
109 |
attgtgacagtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatag |
208 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| | |||||||||| ||| |
|
|
| T |
38058651 |
attgtgacagtcttcaatgttccaaaaacattggaacacaatgcaacaaagcttattcacaagtggcagtttttgacaagtagaattgatgaaaacttag |
38058750 |
T |
|
| Q |
209 |
ccatgaatattgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggagg |
308 |
Q |
| |
|
|| | | || ||| ||||||| |||||||||||| ||| || ||||||| ||| | |||| || | |||||||||| |||||||||||||| |
|
|
| T |
38058751 |
aaattactgttatcttacaaaggg------taaattcaagtataaaggggaagtcaaaatcaacagtacaagctatatttcaagccttgtttcttggagg |
38058844 |
T |
|
| Q |
309 |
tgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttctttac |
408 |
Q |
| |
|
|||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| ||||||||| |
|
|
| T |
38058845 |
agtagataagctcatacacttgatgcaagagaagtttcctgagcttggtttggttagagaagattgtgttgagatgagttgggttgaatcagttctttac |
38058944 |
T |
|
| Q |
409 |
ttttttcagtttccaaaaggttctccacctgaagtgttgcttaacagaacacaagctacacttgatatattcaaagcaaaatctgattttgtgagaattc |
508 |
Q |
| |
|
||| |||||| |||| |||| |||| |||||| |||||||||| ||| || ||||| | ||||| ||||||||||||||| | ||||| |
|
|
| T |
38058945 |
ctttacgggtttccgaaagacgaaccacttgaaacgttgctcaacagaacacttgctgcaaaggatatttacaaagtaaaatctgattttgtcaaaattc |
38059044 |
T |
|
| Q |
509 |
caattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatgga |
608 |
Q |
| |
|
| ||||||||| |||||||||||| ||||||||| | ||| ||||||| ||| |||||||||| ||| ||||||| ||||| || ||||||| |||||| |
|
|
| T |
38059045 |
ccattcctgaagttggattagaaggaatatggcctatgtttcatgaagatggtgccaaagatgccatggtgatatgttttccttatggtggcataatgga |
38059144 |
T |
|
| Q |
609 |
tacaatttcagagtctgaaattccatttcctcatagaagtggaaacttat-tcatgattcaatactcggttcattggcatcaagaaggtgatgaggtgga |
707 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||| |||||| |||| ||| ||| | ||||| |||||||||||||||||| |||||||||| || |
|
|
| T |
38059145 |
taatatttcagagtctgaaattccatttccacacagacatggaaatttatatca-aatttattactcagttcattggcatcaagaaagtgatgaggtaga |
38059243 |
T |
|
| Q |
708 |
aaagttgcacatcaattggattagaaaa |
735 |
Q |
| |
|
||| || | || ||||||||| ||||| |
|
|
| T |
38059244 |
aaaaatgaaaatgaattggattggaaaa |
38059271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 244 - 369
Target Start/End: Original strand, 38077976 - 38078102
Alignment:
| Q |
244 |
tcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttctt-ggaggtgtagataaactcatacccttggttcaagagaag |
342 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||| |||| |||||| || |||||||||||| ||||||| |||||| | ||||||||| |
|
|
| T |
38077976 |
tcaagtaaaaaaggtgagtcaaagtcaacagtactagctttattttaagccttgtttttttggaggtgtagatgaactcatgcccttgatgcaagagaag |
38078075 |
T |
|
| Q |
343 |
tttcctgagcttggtttggttagagaa |
369 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38078076 |
tttcctgagcttggtttggttagagaa |
38078102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 37954490 - 37954593
Alignment:
| Q |
295 |
ttgtttcttggaggtgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattg |
394 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||| | ||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
37954490 |
ttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtactgagatgagttggattg |
37954589 |
T |
|
| Q |
395 |
aatc |
398 |
Q |
| |
|
|||| |
|
|
| T |
37954590 |
aatc |
37954593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 38090804 - 38090865
Alignment:
| Q |
28 |
ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaa |
89 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
38090804 |
ttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaa |
38090865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 36080190 - 36080264
Alignment:
| Q |
22 |
gatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgtt |
96 |
Q |
| |
|
||||| ||||||||||| || |||||||| || ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
36080190 |
gatttattttgggctataaggggtggtggtggtgcaagttttggtgtcattcttaaatggaagattaaacttgtt |
36080264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 37954219 - 37954321
Alignment:
| Q |
15 |
gggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtg |
114 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||||||||| ||||| || || | |||||||| | ||||| ||| | |||||||||| |||| |
|
|
| T |
37954219 |
gggtgaggatctgttttgggctattagaggaggtggaggagcaagctttggagttatcatagcatggaaggtaaaactagttcatgttccatcaactgtg |
37954318 |
T |
|
| Q |
115 |
aca |
117 |
Q |
| |
|
||| |
|
|
| T |
37954319 |
aca |
37954321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 38125638 - 38125675
Alignment:
| Q |
28 |
ttttgggctattagaggtggtggaggagcaagttttgg |
65 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38125638 |
ttttgggctattagaggaggtggaggagcaagttttgg |
38125675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 38129591 - 38129628
Alignment:
| Q |
28 |
ttttgggctattagaggtggtggaggagcaagttttgg |
65 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38129591 |
ttttgggctattagaggaggtggaggagcaagttttgg |
38129628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 34971587 - 34971530
Alignment:
| Q |
26 |
tcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa |
83 |
Q |
| |
|
||||||||||||| ||||||||||| || || ||||||||||| || |||||||||| |
|
|
| T |
34971587 |
tcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa |
34971530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 7001540 - 7001405
Alignment:
| Q |
28 |
ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactg |
127 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||| || | |||||||||| | | |
|
|
| T |
7001540 |
ttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtatgacagtgttgaatt |
7001441 |
T |
|
| Q |
128 |
ttccaaaaacattggaacaaaatgcaacaaagcttg |
163 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
7001440 |
tgccaaaaacattggatcaaaatgcaacaaagcttg |
7001405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 10792936 - 10793015
Alignment:
| Q |
133 |
aaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccat |
212 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||| || || |||||| | |||||| ||| |||||||| |
|
|
| T |
10792936 |
aaaacattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccat |
10793015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 10792886 - 10792923
Alignment:
| Q |
28 |
ttttgggctattagaggtggtggaggagcaagttttgg |
65 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10792886 |
ttttgagctattagaggaggtggaggagcaagttttgg |
10792923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 11787068 - 11787021
Alignment:
| Q |
19 |
gaggatttcttttgggctattagaggtggtggaggagcaagttttggt |
66 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
11787068 |
gaggaattcttttgggctattagaggtggtggaggtggaagttttggt |
11787021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 34268699 - 34268620
Alignment:
| Q |
133 |
aaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccat |
212 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||| || || |||||| | |||||| ||| |||||||| |
|
|
| T |
34268699 |
aaaacattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccat |
34268620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 34268749 - 34268712
Alignment:
| Q |
28 |
ttttgggctattagaggtggtggaggagcaagttttgg |
65 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
34268749 |
ttttgagctattagaggaggtggaggagcaagttttgg |
34268712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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