View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_1 (Length: 920)

Name: NF3728_low_1
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_1
NF3728_low_1
[»] chr5 (19 HSPs)
chr5 (18-464)||(34334866-34335312)
chr5 (466-907)||(34335413-34335856)
chr5 (477-731)||(35310535-35310784)
chr5 (472-731)||(433374-433628)
chr5 (568-731)||(38446344-38446502)
chr5 (466-731)||(13166681-13166941)
chr5 (510-731)||(27336813-27337029)
chr5 (568-727)||(32269574-32269726)
chr5 (596-731)||(3113936-3114065)
chr5 (484-657)||(33691895-33692068)
chr5 (544-658)||(43129688-43129801)
chr5 (510-731)||(15291794-15292013)
chr5 (557-731)||(26212354-26212523)
chr5 (362-461)||(32269932-32270030)
chr5 (361-459)||(13167047-13167145)
chr5 (544-626)||(35456110-35456192)
chr5 (372-461)||(2566230-2566319)
chr5 (591-731)||(6534334-6534469)
chr5 (403-461)||(23023509-23023567)
[»] chr7 (14 HSPs)
chr7 (472-731)||(28517058-28517312)
chr7 (510-731)||(45613613-45613829)
chr7 (586-731)||(47679321-47679461)
chr7 (533-664)||(5825414-5825545)
chr7 (466-731)||(4501334-4501594)
chr7 (518-665)||(43857002-43857149)
chr7 (550-731)||(3676800-3676976)
chr7 (466-667)||(19277369-19277570)
chr7 (466-626)||(21326709-21326869)
chr7 (676-736)||(32585428-32585488)
chr7 (583-731)||(10905298-10905439)
chr7 (362-461)||(22197860-22197959)
chr7 (362-461)||(22239862-22239961)
chr7 (478-728)||(983037-983282)
[»] chr6 (13 HSPs)
chr6 (466-731)||(357488-357748)
chr6 (550-731)||(32115849-32116025)
chr6 (466-727)||(34304572-34304828)
chr6 (584-731)||(12401525-12401667)
chr6 (550-731)||(4206367-4206543)
chr6 (472-656)||(33220552-33220736)
chr6 (581-664)||(29337916-29337999)
chr6 (478-631)||(28543463-28543616)
chr6 (362-458)||(959454-959550)
chr6 (590-658)||(20693440-20693508)
chr6 (584-731)||(45440-45582)
chr6 (414-461)||(32115643-32115690)
chr6 (361-459)||(28543269-28543367)
[»] chr2 (20 HSPs)
chr2 (466-731)||(4412837-4413097)
chr2 (466-731)||(44686496-44686754)
chr2 (526-731)||(17344774-17344974)
chr2 (478-731)||(27502450-27502697)
chr2 (466-728)||(9685189-9685446)
chr2 (584-731)||(41867679-41867821)
chr2 (550-731)||(18744725-18744901)
chr2 (496-667)||(3825833-3826004)
chr2 (586-649)||(9675040-9675103)
chr2 (484-731)||(20142511-20142753)
chr2 (568-731)||(28225178-28225336)
chr2 (640-727)||(5532669-5532758)
chr2 (549-655)||(10579621-10579727)
chr2 (584-731)||(16351610-16351752)
chr2 (548-658)||(23484777-23484887)
chr2 (583-659)||(13146972-13147048)
chr2 (362-461)||(4413201-4413300)
chr2 (362-461)||(19161918-19162017)
chr2 (584-666)||(19161614-19161696)
chr2 (411-461)||(44190139-44190189)
[»] chr4 (24 HSPs)
chr4 (466-731)||(50000696-50000956)
chr4 (510-731)||(30940510-30940726)
chr4 (568-731)||(3330128-3330286)
chr4 (478-731)||(132473-132722)
chr4 (581-723)||(25706700-25706837)
chr4 (510-731)||(26521608-26521824)
chr4 (478-642)||(53619674-53619838)
chr4 (478-731)||(31847175-31847420)
chr4 (581-731)||(16957727-16957872)
chr4 (510-659)||(56461945-56462094)
chr4 (510-666)||(12918203-12918359)
chr4 (581-727)||(12053602-12053743)
chr4 (512-731)||(25504415-25504629)
chr4 (676-731)||(34952452-34952507)
chr4 (361-459)||(50001063-50001161)
chr4 (361-459)||(4419136-4419233)
chr4 (581-659)||(18534591-18534669)
chr4 (385-461)||(23242796-23242872)
chr4 (476-656)||(55933303-55933483)
chr4 (362-459)||(3329869-3329966)
chr4 (583-656)||(6865654-6865727)
chr4 (361-458)||(39001269-39001366)
chr4 (478-538)||(600651-600711)
chr4 (416-461)||(16955387-16955432)
[»] chr3 (16 HSPs)
chr3 (568-731)||(29861975-29862133)
chr3 (466-714)||(39583017-39583260)
chr3 (550-731)||(52741282-52741458)
chr3 (466-731)||(53785785-53786045)
chr3 (545-731)||(7901013-7901188)
chr3 (584-731)||(49018157-49018299)
chr3 (361-459)||(26772630-26772728)
chr3 (403-461)||(52412026-52412084)
chr3 (679-727)||(35236412-35236460)
chr3 (362-461)||(32546668-32546767)
chr3 (581-725)||(37992523-37992662)
chr3 (361-461)||(39583364-39583464)
chr3 (362-461)||(53785582-53785681)
chr3 (403-461)||(4669798-4669856)
chr3 (411-461)||(38145978-38146028)
chr3 (361-446)||(7502160-7502245)
[»] chr8 (12 HSPs)
chr8 (466-731)||(39434743-39435003)
chr8 (472-705)||(25021611-25021839)
chr8 (477-714)||(35739775-35740006)
chr8 (477-731)||(24125115-24125364)
chr8 (572-731)||(42921898-42922052)
chr8 (568-667)||(11611078-11611177)
chr8 (361-461)||(38815166-38815266)
chr8 (382-445)||(8540531-8540594)
chr8 (379-461)||(6618175-6618257)
chr8 (671-710)||(8116087-8116126)
chr8 (466-563)||(38815370-38815467)
chr8 (582-623)||(38815476-38815517)
[»] chr1 (17 HSPs)
chr1 (466-731)||(34644642-34644902)
chr1 (466-731)||(28040898-28041158)
chr1 (495-731)||(37931989-37932220)
chr1 (568-731)||(29169565-29169723)
chr1 (361-458)||(6790800-6790898)
chr1 (362-461)||(4611062-4611161)
chr1 (550-657)||(45659487-45659594)
chr1 (544-653)||(4861833-4861942)
chr1 (568-727)||(38731758-38731912)
chr1 (518-656)||(25375674-25375812)
chr1 (583-665)||(37200174-37200255)
chr1 (670-731)||(7794687-7794748)
chr1 (374-459)||(34644451-34644536)
chr1 (582-659)||(43831435-43831512)
chr1 (596-655)||(22375479-22375538)
chr1 (592-659)||(42920061-42920128)
chr1 (377-459)||(2764367-2764449)
[»] scaffold0186 (1 HSPs)
scaffold0186 (585-731)||(19916-20057)
[»] scaffold0110 (1 HSPs)
scaffold0110 (466-659)||(47377-47570)
[»] scaffold1768 (1 HSPs)
scaffold1768 (475-667)||(14-206)
[»] scaffold0009 (1 HSPs)
scaffold0009 (362-458)||(102979-103075)
[»] scaffold0470 (1 HSPs)
scaffold0470 (379-461)||(7493-7575)
[»] scaffold0148 (1 HSPs)
scaffold0148 (592-706)||(33453-33561)
[»] scaffold0224 (1 HSPs)
scaffold0224 (592-659)||(18203-18270)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 34334866 - 34335312
Alignment:
Q  18 tgctgaatgtgattcttttatcgtattcaaaggatacattaagtaaaaaattgggatattttgttaaccatattgtactagaaacaaatctttgttgaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34334866 tgctgaatgtgattcttttatcgtattcaaaggatacattaagtaaaaaattgggatattttgttaaccatattatactagaaacaaatctttgttgaaa 34334965  T
Q  118 caaattaagcaaaatattaaagcttagtttatgacaaaataatatccttgtcaaccggctctaaatacttnnnnnnncgaactaaaattcacttctagaa 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  34334966 caaattaagcaaaatattaaagcttagttcatgacaaaataatatccttgtcaaccggctctaaatactaaaaaaaacgaactaaaattcacttctagaa 34335065  T
Q  218 gctaatgtgagcatgttattttattaaaggattcaaatgtaatattagaacctctaccactatttttctgagcttttgtgccttttcttgggtctatggt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335066 gctaatgtgagcatgttattttattaaaggattcaaatgtaatattagaacctctaccactatttttctgagcttttgtgccttttcttgggtctatggt 34335165  T
Q  318 attacttgctgtggaatgtgattttcaagttgttatcacttatatgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaa 417  Q
    |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  34335166 attacttgttgtggaatgtgattttcaagttgtcatcacttacatgaatagaatgcaagcgggtaacaagttgtgccgctaggtgtttttaggtgacaaa 34335265  T
Q  418 atcaatcatcgtaaacataatatttatgggcctaggagacatgagat 464  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  34335266 atcaatcatcgtaaacacaatatttatgggtctaggagacatgagat 34335312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 466 - 907
Target Start/End: Original strand, 34335413 - 34335856
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335413 gtcaggacacgctttctcatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 34335512  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  34335513 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagcctaagtgtcgatcttctatctagtgggtcag 34335612  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatc-aaagggcatccttattcagtgcacttcaactcatat 764  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34335613 tcgggtcaagaagtttacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaaagggcatccttattcagtgcacttcaactcatat 34335712  T
Q  765 tgcggctcttcaaccattcttaatcgacaatctttgtcgtatccatctttctaaatgtctcgttgaagcatatttacaaaaaagctaactcttatgtcga 864  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335713 tgcggctcttcaaccattcttaatcgacaatctttgtcttatccatctttctaaatgtctcgttgaagcatatttacaaaaaagctaactcttatgtcga 34335812  T
Q  865 -nnnnnnnngctaacataagtcaccatagttctttctctttgat 907  Q
             |||||||||||||||||||||||||||||||||||    
T  34335813 tttttttttgctaacataagtcaccatagttctttctctttgat 34335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 477 - 731
Target Start/End: Original strand, 35310535 - 35310784
Alignment:
Q  477 ctttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagt 576  Q
    |||||| ||||||||||  ||||||||||    ||||||||||||||| |||||| ||||||||   ||||| ||| || ||||||| |  ||||||| |    
T  35310535 ctttctcatgtttggccactttgcttgacgcatcttttagggttgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaat 35310634  T
Q  577 gaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaaga 676  Q
     || ||||||||||||||||||||||| || |||  ||||| ||||||||  ||||| |||||||| |||||||||||||||| ||||     || | ||    
T  35310635 caagtccacacatgcatgttttcctccaacccatccgtacatcataacatccgcaagcctaagtgttgatcttctatctagtgggtca-----gttagga 35310729  T
Q  677 agttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||||| |||||| ||||||||||||||||| ||| |||| ||||||||||||    
T  35310730 agttcacaggcgcctccttcttcactgatactctcgctcgcccgaatatatcaaa 35310784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 472 - 731
Target Start/End: Original strand, 433374 - 433628
Alignment:
Q  472 acacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaacc 571  Q
    |||| |||||| ||||||||||  |||||||||||  ||||||| ||||||||||||||| ||||||||    |||||||| || ||| ||| |  ||||    
T  433374 acacgctttctcatgtttggccactttgcttgacacagcttttaaggttgtctatcctaccgtaaaagcccctacccttaaacccacaggtggtgaaacc 433473  T
Q  572 ccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggt 671  Q
    || || || ||||||||||||| ||||||||| || ||| |||||||||||||||  ||| | |||||||| |||||||||| ||||| | ||     ||    
T  433474 ccggtcaagtccacacatgcatattttcctccaacccatctgtacaccataacatccgcatgcctaagtgtggatcttctatttagtgggcca-----gt 433568  T
Q  672 caagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||  ||||||||  ||||||  |||||||| |||| ||||||||| ||||||||||||||    
T  433569 cagaaagttcacgggcgcctctttcttcaccgatattcccgcccgtctgaatatatcaaa 433628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 568 - 731
Target Start/End: Original strand, 38446344 - 38446502
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    |||| |||| || |||||||||||||||||| |||| || |||  |||||||||||||| |||| | |||||||||||| |||||||||| | |||||||    
T  38446344 aacctcagtcaagtccacacatgcatgttttactccaacccatccgtacaccataacatttgcatgcctaagtgtcgatattctatctagagggtcagtc 38446443  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
     |      || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38446444 aga-----aaattcacatgcgcctccttcttcactgatactcccgcccgcctgaatatatcaaa 38446502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 466 - 731
Target Start/End: Complemental strand, 13166941 - 13166681
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaa--tcctacaagtg 563  Q
    ||||| |||| |||||| |||||| |||  ||||||||||   | |||||||||||||| ||| || ||||||||  | |||| |||  ||| |||||||    
T  13166941 gtcagaacacgctttctcatgtttagccactttgcttgacgcagattttagggttgtctgtcccaccgtaaaagccctaacccataaaatcc-acaagtg 13166843  T
Q  564 atagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtc 663  Q
     | ||| |||||| || ||||||||||||||||||||||| || |||  ||| ||||||||||  ||| |  |||||||||||||||||||||||| |||    
T  13166842 gt-gaaacccagtcaagtccacacatgcatgttttcctccaacccatccgtagaccataacatccgcatgcttaagtgtcgatcttctatctagtgggtc 13166744  T
Q  664 agtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |     ||||  ||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||    
T  13166743 a-----gtcagaaagttcacaggcgcttccttcttcactgatacttccgcccgcctgaatatatcaaa 13166681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 510 - 731
Target Start/End: Original strand, 27336813 - 27337029
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    ||||||||| ||||| |||||  ||||||||    |||| ||| || ||||||| |  ||||||||| || ||||||||||||||||||||||| || ||    
T  27336813 cttttagggctgtctgtcctattgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaaccca 27336912  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactc 709  Q
    |  ||||||||||||||  ||| | ||||||||||||||||||||||||| ||||     ||||  ||||||||| | || |  ||||||||||||||||    
T  27336913 tccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtca-----gtcagaaagttcacaggagcttctttcttcactgatactc 27337007  T
Q  710 ccgcccgcctgaatatatcaaa 731  Q
    | || |||||||||||||||||    
T  27337008 ctgctcgcctgaatatatcaaa 27337029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 568 - 727
Target Start/End: Complemental strand, 32269726 - 32269574
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||||||||| || || ||||||||||||||||||||||| |||  |||||||||||||| ||||  | | ||||| |||||||||||||||| ||||||     
T  32269726 aaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatctgcagatttgagtgttgatcttctatctagtgggtcagtt 32269627  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatat 727  Q
     ||  ||     |||||||||||||||||||||||| ||||||||| || ||||||||||    
T  32269626 agg--aa-----tcacatgcgccttcttcttcactgctactcccgctcgtctgaatatat 32269574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 596 - 731
Target Start/End: Complemental strand, 3114065 - 3113936
Alignment:
Q  596 tttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttctt 695  Q
    ||||||| ||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||| | |||||||      ||||||||| | |||| |||    
T  3114065 tttcctcttacccatttgtacaccataacatctgcatgactaagtgttgatcttctatctagtg-ggcagtcgg-----caagttcacaggggcctcctt 3113972  T
Q  696 cttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||||||||||||||||||||  ||||||||||||||    
T  3113971 cttcactgatactcccgcccagctgaatatatcaaa 3113936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 484 - 657
Target Start/End: Complemental strand, 33692068 - 33691895
Alignment:
Q  484 atgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattcc 583  Q
    ||||||||||  ||||||||||   |||||||||  || || |||||| ||||||||   ||||| ||| || ||||||| |  |||| |||| || |||    
T  33692068 atgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtcc 33691969  T
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctag 657  Q
    |||||||||||||||||||| || |||  |||||||||||||| |||| |  ||||||||||||||||||||||    
T  33691968 acacatgcatgttttcctccaacccatccgtacaccataacatttgcaggcttaagtgtcgatcttctatctag 33691895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 544 - 658
Target Start/End: Original strand, 43129688 - 43129801
Alignment:
Q  544 gacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtc 643  Q
    ||||| |||||| ||||||| |  ||||||||| |||| ||||||||||| |||||||||||  |||  ||||| |||||||| |||| | |||||||||    
T  43129688 gacccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcat-ttttcctcctatccatccgtacatcataacatctgcatgcctaagtgtc 43129786  T
Q  644 gatcttctatctagt 658  Q
    |||||||||||||||    
T  43129787 gatcttctatctagt 43129801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 510 - 731
Target Start/End: Complemental strand, 15292013 - 15291794
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    ||||||||||||||| || ||| | |||||    ||| |||||||| ||||||| |  |||| || | || || |||||  |||||||||||||||| ||    
T  15292013 cttttagggttgtctgtcataccgcaaaaggcccgacacttaatccaacaagtggtgaaacctcattcaagtctacacaaacatgttttcctcctaccca 15291914  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttca---ctgata 706  Q
       ||||||||||||||  ||| | || ||||| |||||||||||||||| |||||| ||     |||||||||| |||| | ||||||||   ||||||    
T  15291913 gccgtacaccataacattcgcaggcctgagtgttgatcttctatctagtgggtcagttgg-----gaagttcacaggcgcttccttcttcactgctgata 15291819  T
Q  707 ctcccgcccgcctgaatatatcaaa 731  Q
    |||||||||  ||||||||||||||    
T  15291818 ctcccgcccatctgaatatatcaaa 15291794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 557 - 731
Target Start/End: Complemental strand, 26212523 - 26212354
Alignment:
Q  557 acaagtgatagaaccccagtgaattccacacatgcatgtttt-cctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatct 655  Q
    |||||||||  ||||||||| || || |||||||||| |||| || ||||  ||   ||||||||| |||| |||| | || ||||| ||||||||||||    
T  26212523 acaagtgatgaaaccccagtcaaatctacacatgcatttttttccacctagccacccgtacaccatcacatctgcatgcctgagtgttgatcttctatct 26212424  T
Q  656 agtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||| ||||||| ||     ||||||||| |||||| |||||||||||||| |||| |||  ||||||||||||||    
T  26212423 agtgggtcagtcagg-----aagttcacaggcgcctccttcttcactgatattcccaccc-tctgaatatatcaaa 26212354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 362 - 461
Target Start/End: Complemental strand, 32270030 - 32269932
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| |||||||||||||||| ||  |||||| |  ||||||| || | ||||||||| ||||||||| || ||| |||| ||||||||||||||    
T  32270030 tgaatagaaggcaagcgggtaacaagctgc-ccgctatgcttttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctaggagacatga 32269932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 13167145 - 13167047
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    |||||||| | ||||| ||| |||||| || |||||||| | ||||||| | ||| |||||||||||||||||  || ||| |||| ||||||||||||    
T  13167145 atgaataggaggcaagtgggcaacaagctgcgccgctagatctttttggataacagaatcaatcatcgtaaacccaacattcatggacctaggagacat 13167047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 626
Target Start/End: Original strand, 35456110 - 35456192
Alignment:
Q  544 gacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacat 626  Q
    ||||| ||||||||| ||||  | |||||| || || ||||||||||||| ||| |||||||| ||| |||||||||||||||    
T  35456110 gacccctaatcctacgagtggcaaaaccccggtcaagtccacacatgcatatttacctcctacccatctgtacaccataacat 35456192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 461
Target Start/End: Complemental strand, 2566319 - 2566230
Alignment:
Q  372 gcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||| ||| ||||||||| ||||||||   ||||||| || ||||||||||| ||||||||| || ||| ||||  |||||||||||||    
T  2566319 gcaagtgggcaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctaggagacatga 2566230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 731
Target Start/End: Complemental strand, 6534469 - 6534334
Alignment:
Q  591 catgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgcc 690  Q
    |||||||||||||||| |||   ||||  |||||||||| | || ||| ||||||||||||||||| || || | || |      ||||||||||||| |    
T  6534469 catgttttcctcctacccataaatacataataacatatgtatgtttaaatgtcgatcttctatctaatgggttattcaga-----aagttcacatgcgtc 6534375  T
Q  691 ttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |  ||||||| |||||||||||||| ||| |||||||||||    
T  6534374 tctttcttcattgatactcccgcccacctaaatatatcaaa 6534334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 23023509 - 23023567
Alignment:
Q  403 tttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||| |||||||||||||| ||||||||| || ||| || | ||||||||||||||    
T  23023509 tttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctaggagacatga 23023567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 472 - 731
Target Start/End: Complemental strand, 28517312 - 28517058
Alignment:
Q  472 acacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaacc 571  Q
    |||| |||||| ||||||||||  ||||||||||   |||||||||||||||| |||||| ||||||||    |||| ||| || ||||||| |  ||||    
T  28517312 acacgctttctcatgtttggccactttgcttgacgcagcttttagggttgtctgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaacc 28517213  T
Q  572 ccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggt 671  Q
    ||||| || ||||||||| ||||||||||||| || |||  |||||||||||||| |||| | ||||||||||||||||||||||||| ||||     ||    
T  28517212 ccagtcaagtccacacatacatgttttcctccaacccatccgtacaccataacatttgcaggcctaagtgtcgatcttctatctagtgggtca-----gt 28517118  T
Q  672 caagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||  ||||||||| |||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  28517117 cagaaagttcacaggcgcctccttcttcaccgatgctcccgctcgcctgaatatatcaaa 28517058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 510 - 731
Target Start/End: Complemental strand, 45613829 - 45613613
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    ||||||||||||||| |||||| | |||||    ||| | |||||||||||||| |  ||||||||| || || ||||||||||||||||||||||| ||    
T  45613829 cttttagggttgtctgtcctacggaaaaaggcccgacacctaatcctacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctaccca 45613730  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactc 709  Q
    || ||||| ||||||||  ||| | || ||||| |||||||| ||||| | ||||     |||| ||||||||||  || || |||||||||||||||||    
T  45613729 ttcgtacatcataacatccgcaggcctgagtgttgatcttctttctagcgggtca-----gtcaggaagttcacagacgtctccttcttcactgatactc 45613635  T
Q  710 ccgcccgcctgaatatatcaaa 731  Q
    | ||||| ||||||||||||||    
T  45613634 ctgcccgtctgaatatatcaaa 45613613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 586 - 731
Target Start/End: Original strand, 47679321 - 47679461
Alignment:
Q  586 acatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacat 685  Q
    ||||| ||||||||||||||| |||| | || |||| ||||  | ||||| ||||||||||||||||||||||||||||     ||||  |||||||||     
T  47679321 acatgtatgttttcctcctacccattcgcacgccattacattcgtaagtcaaagtgtcgatcttctatctagtgcgtca-----gtcagaaagttcacac 47679415  T
Q  686 gcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||| || ||||||||||||||| |||||||||||||||||||||||    
T  47679416 gcgactccttcttcactgatacccccgcccgcctgaatatatcaaa 47679461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 533 - 664
Target Start/End: Original strand, 5825414 - 5825545
Alignment:
Q  533 gtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaa 632  Q
    |||||||| | ||||| ||| || ||||||| |  ||||||||| || ||||||||||||||||||||||| || |||| ||||||||||||||  |||     
T  5825414 gtaaaagcctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccattcgtacaccataacatccgcag 5825513  T
Q  633 gtctaagtgtcgatcttctatctagtgcgtca 664  Q
    | ||| ||||||||||||||||||||| ||||    
T  5825514 gcctatgtgtcgatcttctatctagtgggtca 5825545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 466 - 731
Target Start/End: Original strand, 4501334 - 4501594
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  |||| |||||   |||||||||||||| | |||||| |||||||    ||| | |||||| ||||||| |    
T  4501334 gtcagaacacgctttctcatgtttggccactttgtttgacgcagcttttagggttgtttgtcctacggtaaaaggcccgacacctaatcccacaagtggt 4501433  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || || |||||||||||||||||||||||  ||  ||||||||||||||  ||  | || |||||  ||||||||||||||| ||||     
T  4501434 gaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgctggcctgagtgtttatcttctatctagtgggtca- 4501532  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
         ||| |||||||||| || |||  ||||||| |||||||||||||   ||||||||||||||    
T  4501533 ----ttcaggaagttcacaagcacctctttcttcattgatactcccgcctatctgaatatatcaaa 4501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 518 - 665
Target Start/End: Original strand, 43857002 - 43857149
Alignment:
Q  518 gttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtaca 617  Q
    ||||||| |||||| ||||||||   ||||| |||||| ||||||| |  |||||| || || ||||| |||| ||||||| ||||||| |||  |||||    
T  43857002 gttgtctgtcctactgtaaaagccccgacccctaatcccacaagtggtgaaacccccgtcaagtccacgcatgtatgtttttctcctacccatccgtaca 43857101  T
Q  618 ccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
    ||||||||| |||| | |||||||| |||||||||||||||| |||||    
T  43857102 ccataacatctgcaggcctaagtgttgatcttctatctagtgggtcag 43857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 550 - 731
Target Start/End: Original strand, 3676800 - 3676976
Alignment:
Q  550 taatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||| ||||||| |  ||||||||| || || ||||| ||||||||||| ||||| |||   ||||||||||||| | |||| || ||||| ||| ||    
T  3676800 taatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccctacaccataacatctacaagcctgagtgttgatttt 3676899  T
Q  650 ctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||||||| || ||||||| ||     ||||||||| | |||| |||||||| ||||| ||||||||| ||||||||||||||    
T  3676900 ctatctattgggtcagtcagg-----aagttcacaggtgcctccttcttcattgatattcccgcccgtctgaatatatcaaa 3676976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 466 - 667
Target Start/End: Original strand, 19277369 - 19277570
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| |||||||||   ||||||||||   |||||||||  || || |||||| | ||||| | |||  | |||||| ||||||| |    
T  19277369 gtcagaacacgctttctcatgtttggctactttgcttgacgcagcttttaggactgcctgtcctacggcaaaaggtctgaaacctaatccgacaagtggt 19277468  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || || ||||| ||||||||||| ||||| |||  ||| ||||||||||  ||| | || ||||| ||||||||||||||||||||||    
T  19277469 gaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtagaccataacatccgcaggcctgagtgttgatcttctatctagtgcgtcag 19277568  T
Q  666 tc 667  Q
    ||    
T  19277569 tc 19277570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 466 - 626
Target Start/End: Complemental strand, 21326869 - 21326709
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  ||||||||||  ||||||||||| ||| | |||||| ||||||| |  ||| | |||||| ||||||| |    
T  21326869 gtcagaacacgctttctcatgtttggccactttgcttgacgcggcttttagggctgtttgtcctacggtaaaaggtccgacacctaatcccacaagtggt 21326770  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacat 626  Q
      ||| ||| | || || ||||| | ||||||||| ||||| ||| |||||||||||||||    
T  21326769 gaaactccaatcaaatctacacaagtatgttttccacctacccatctgtacaccataacat 21326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 676 - 736
Target Start/End: Original strand, 32585428 - 32585488
Alignment:
Q  676 aagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaagggca 736  Q
    |||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||| ||||    
T  32585428 aagttcacatgcgcctccttcttcacttatactcctgcccacctgaatatatcaaaaggca 32585488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 583 - 731
Target Start/End: Original strand, 10905298 - 10905439
Alignment:
Q  583 cacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaag-aagttc 681  Q
    |||||||||||||||||||||||  |||  |||||||  ||||| |||| | ||||||||||||||| |||||||||  |||       |||| ||||||    
T  10905298 cacacatgcatgttttcctcctatccatccgtacacc--aacatctgcaggcctaagtgtcgatcttatatctagtggatca------acaagaaagttc 10905389  T
Q  682 acatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    | | || ||| ||||||||||||||||||||||  |||| ||||||||||    
T  10905390 ataggctcctccttcttcactgatactcccgccttcctggatatatcaaa 10905439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 22197860 - 22197959
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    |||||||||  |||||||| |||||||||  |||| | |  ||||||| ||||||||||||| |||||||||| || ||| || | ||||||||||||||    
T  22197860 tgaatagaagacaagcgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatga 22197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 362 - 461
Target Start/End: Complemental strand, 22239961 - 22239862
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    |||||||||  |||||||| |||||||||  |||| | |  ||||||| ||||||||||||| |||||||||| || ||| || | ||||||||||||||    
T  22239961 tgaatagaagacaagcgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatga 22239862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 728
Target Start/End: Original strand, 983037 - 983282
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtg 577  Q
    ||||| ||||||||||  ||||||||||   ||||||| || || || ||||||| |||||| |   || | |||||| ||||||| |  ||||| |||     
T  983037 tttctcatgtttggccactttgcttgacgcagcttttatggctgcctgtcctacaataaaaggtcccacacctaatcccacaagtggttaaaccctagtc 983136  T
Q  578 aattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaa 677  Q
    || || ||||| ||||||||| | |||||||||| ||||| |||||| |  | | | || ||||| |||||||||||||||| ||||     || | |||    
T  983137 aagtctacacaagcatgtttttcacctactcattcgtacatcataacttccggatgcctgagtgttgatcttctatctagtgggtca-----gttaggaa 983231  T
Q  678 gttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatc 728  Q
    ||||||   ||||| |||||||||||||| ||||| | | |||||||||||    
T  983232 gttcaccgacgcctccttcttcactgataatcccgtcagtctgaatatatc 983282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 5e-43; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 466 - 731
Target Start/End: Complemental strand, 357748 - 357488
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  ||||||||||   |||||||||| || || |||||| ||||||||   ||||| ||| || ||||||| |    
T  357748 gtcagaacacgctttctcatgtttggccactttgcttgacgaagcttttagggctgcctgtcctaccgtaaaagcaccgacccctaaacccacaagtggt 357649  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||| ||||| || |||||||||||||||||| |||| || |||   ||||||||||||| ||||   ||||||||||||||||||||||||| |||||    
T  357648 gaaactccagtcaagtccacacatgcatgttttgctccaacccatccatacaccataacatctgcatacctaagtgtcgatcttctatctagtgtgtcag 357549  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||     || ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  357548 tc-----aaaaagttcacaagggcctccttcttcactgatactcccgcccgcctgaatatatcaaa 357488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 550 - 731
Target Start/End: Original strand, 32115849 - 32116025
Alignment:
Q  550 taatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||| | |||||||  |||||| || || || ||||||||||||||||||||||||||| |||||||||||||||  ||| | || ||||| ||||||    
T  32115849 taatcccataagtgatgaaaccccggtcaagtctacacatgcatgttttcctcctactcatctgtacaccataacatccgcaggcctgagtgttgatctt 32115948  T
Q  650 ctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||||||  ||||     |||| |||||||||||||||||  ||||||||||||||||||||||| |  |||||||||||    
T  32115949 ctatctagtaggtca-----gtcaggaagttcacatgcgcctctttcttcactgatactcccgcccgtcaaaatatatcaaa 32116025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 466 - 727
Target Start/End: Original strand, 34304572 - 34304828
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||   |||||||||||   |||||||||| |  || ||| || ||||||||   ||| | ||| || ||||||| |    
T  34304572 gtcagaacacgctttctcatgtttggttattttgcttgacgcagcttttagggctagctgtccaaccgtaaaagccccgactcctaaacccacaagtggt 34304671  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||| | || |||||||||||||||||||||||  | |||  ||||||||||||||  ||| | ||||||||||||||||||||||||| ||||     
T  34304672 gaaaccccaatcaagtccacacatgcatgttttcctccagcccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtca- 34304770  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatat 727  Q
        ||||  ||||||||||||| || |||||||||||||||||| ||| ||||||||||||    
T  34304771 ----gtcagaaagttcacatgcgtctccttcttcactgatactcctgcctgcctgaatatat 34304828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 584 - 731
Target Start/End: Original strand, 12401525 - 12401667
Alignment:
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcac 683  Q
    ||||||||||||||||||||||| |||  |||||||||||||| ||||    ||||| | ||||| |||||||||  ||||||| ||     ||||||||    
T  12401525 acacatgcatgttttcctcctacccatccgtacaccataacatttgcagacttaagtcttgatctgctatctagtaggtcagtcagg-----aagttcac 12401619  T
Q  684 atgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    | |||||| |||||||||| |||||| |||||||||||||||||||||    
T  12401620 aggcgcctccttcttcactaatactctcgcccgcctgaatatatcaaa 12401667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 550 - 731
Target Start/End: Complemental strand, 4206543 - 4206367
Alignment:
Q  550 taatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||| ||||||| |  ||||||||| || || |||||||||||||||||||| || |||||||||||||||||||  ||| |  | ||||| ||||||    
T  4206543 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccaacccatttgtacaccataacatccgcaggcttgagtgttgatctt 4206444  T
Q  650 ctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
     ||||||||| ||||      |||||||||||||  | |||| |||||||||||||| |||| | || ||||||||||||||    
T  4206443 ttatctagtgggtca-----atcaagaagttcacgggtgcctccttcttcactgatattcccacacgtctgaatatatcaaa 4206367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 472 - 656
Target Start/End: Complemental strand, 33220736 - 33220552
Alignment:
Q  472 acacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaacc 571  Q
    |||| |||||| ||||||||||  |||||||||    |||||||| | ||||| |||||| ||||||||   ||||| ||| || ||||||| |  ||||    
T  33220736 acacgctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacc 33220637  T
Q  572 ccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatcta 656  Q
    ||||| || | ||||||||||||||||||||| ||||||  ||||| |||||||| |||| | || |||||| ||||||||||||    
T  33220636 ccagtcaaattcacacatgcatgttttcctccaactcatccgtacatcataacatctgcaggcctgagtgtcaatcttctatcta 33220552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 664
Target Start/End: Complemental strand, 29337999 - 29337916
Alignment:
Q  581 tccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtca 664  Q
    |||||||||||||||||||||||||| ||| || |||||||||||| |||| | ||||||||||| ||||||||||||| ||||    
T  29337999 tccacacatgcatgttttcctcctacccatctgcacaccataacatctgcaggcctaagtgtcgaacttctatctagtgggtca 29337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 478 - 631
Target Start/End: Original strand, 28543463 - 28543616
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtg 577  Q
    ||||| ||||||||||  ||||||||||  | |||||| || || || || ||| |||||||   |||||  |||||| ||||||| |  |||| ||||     
T  28543463 tttctcatgtttggccactttgcttgacgcgacttttaaggctgcctgtcttaccgtaaaagtcctgacctctaatcccacaagtggtgaaacctcagtc 28543562  T
Q  578 aattccacacatgcatgttttcctcctactcatttgtacaccataacatatgca 631  Q
    || |||||||||||||||||||||||||  ||| |||||| |||||||| ||||    
T  28543563 aaatccacacatgcatgttttcctcctatccatctgtacatcataacatctgca 28543616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 959454 - 959550
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagaca 458  Q
    ||||||||| ||||||| | || ||||||||| | ||||  ||||| | |||||||||||||| ||||||||| || ||| |||| |||||||||||    
T  959454 tgaatagaaagcaagcgagaaataagttgtgctgttaggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctaggagaca 959550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 658
Target Start/End: Complemental strand, 20693508 - 20693440
Alignment:
Q  590 gcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagt 658  Q
    ||||||||||||||||| ||| |||||||||||| || |||| | |||||||| |||||| ||||||||    
T  20693508 gcatgttttcctcctacccatctgtacaccataatatctgcaggcctaagtgtggatcttttatctagt 20693440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 584 - 731
Target Start/End: Complemental strand, 45582 - 45440
Alignment:
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcac 683  Q
    ||||| |||||||||||  |||| |||  ||||||||| |||| |||| | || ||||| |||||||||||||||| ||||     ||||  |||||||     
T  45582 acacaagcatgttttccatctacccatccgtacaccatcacatctgcaggcctgagtgttgatcttctatctagtgggtca-----gtcagaaagttcaa 45488  T
Q  684 atgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |  ||||| |||||| ||||||| ||||||||| | ||||||||||||    
T  45487 agacgcctccttcttaactgatattcccgcccgtcagaatatatcaaa 45440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 32115643 - 32115690
Alignment:
Q  414 caaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||||||||||||||| || ||| |||| ||||||||||||||    
T  32115643 caaaatcaatcatcgtaaacacaacattcatggacctaggagacatga 32115690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 28543269 - 28543367
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    |||||||||| ||||||||  ||  ||||| |||||||| | ||||  | || ||||| ||||| || |||||||||||||||||| ||||||| ||||    
T  28543269 atgaatagaaggcaagcggacaattagttgcgccgctagatcttttcagatggcaaaaccaatcctcttaaacataatatttatggacctaggaaacat 28543367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 5e-43; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 466 - 731
Target Start/End: Complemental strand, 4413097 - 4412837
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  |||||||||||  ||||||||||||| || |||||| ||||||| | |||| |||||||| ||||||| |    
T  4413097 gtcagaacacgctttctcatgtttggccactttgcttgacacagcttttagggttgcctgtcctacggtaaaaggtctgacacttaatcccacaagtggt 4412998  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || || ||||| ||||||||||| ||||| |||  ||||||||||||||  ||| | || ||||| |||||||||||||||| |||||    
T  4412997 gaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtcag 4412898  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    || ||     ||||||||| | |||| |||||||||||||| |||||||||  |||||||||||||    
T  4412897 tcagg-----aagttcacaggtgcctccttcttcactgatattcccgcccgtttgaatatatcaaa 4412837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 466 - 731
Target Start/End: Original strand, 44686496 - 44686754
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||   |||||||||  | ||||||||  ||||| |||||  ||||||||   ||||| ||| || ||||||| |    
T  44686496 gtcagaacacgctttctcatgtttggccacattgcttgaccag-cttttaggactgtctgtcctatcgtaaaagccccgacccctaaacccacaagtggt 44686594  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || ||||||||||||||||||| ||| |  |||||||||||||||||||  ||| | ||||||||| ||||||||||||||   |||     
T  44686595 gaaaccccagtcaagtccacacatgcatgttttcgtccaaa-catttgtacaccataacatccgcaggcctaagtgtcaatcttctatctagtagatca- 44686692  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
        ||||  ||||||||| || ||| |||||||||||||||||||||||| ||||||||||||||    
T  44686693 ----gtcacaaagttcacaggcccctccttcttcactgatactcccgcccgtctgaatatatcaaa 44686754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 526 - 731
Target Start/End: Original strand, 17344774 - 17344974
Alignment:
Q  526 tcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataaca 625  Q
    |||||| ||||||| | |||| | |||||| ||||||  |  ||||||||| || || ||||||||||||||||||||||| |||  |||||||||||||    
T  17344774 tcctacggtaaaaggtctgacacctaatcccacaagttgtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataaca 17344873  T
Q  626 tatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatat 725  Q
    |  ||| | || ||||| |||||||| ||||| | ||||     ||||  ||||||||| |||||| |||||||||||||||||| ||||| ||||||||    
T  17344874 tccgcatgcctgagtgttgatcttctttctagcgggtca-----gtcagaaagttcacaggcgcctccttcttcactgatactcctgcccgtctgaatat 17344968  T
Q  726 atcaaa 731  Q
    ||||||    
T  17344969 atcaaa 17344974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 478 - 731
Target Start/End: Original strand, 27502450 - 27502697
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtg 577  Q
    ||||| ||||||| ||  ||||||||||   |||||||||||| | | |||||  ||||||||| |||||| ||| || ||||||| |  ||||||| |     
T  27502450 tttctcatgtttgaccactttgcttgacgcagcttttagggttat-tgtcctatcgtaaaagctctgacccctaaacccacaagtggtgaaaccccattc 27502548  T
Q  578 aattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaa 677  Q
    |  ||||||||||||||||||||||| || |||  ||||||||||||||  ||| | |||||||||||||||  |||||||| ||||     ||||  ||    
T  27502549 aggtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttgcatctagtgggtca-----gtcagaaa 27502643  T
Q  678 gttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||||||| |||||| |||||||| |||||||||||| | | |||||||||||||    
T  27502644 gttcacaggcgcctccttcttcagtgatactcccgctcacttgaatatatcaaa 27502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 466 - 728
Target Start/End: Complemental strand, 9685446 - 9685189
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||| | ||||||||||  ||||||||||  || |||||||| || ||||||||| ||||||| | |||| | |||||| ||||||| |    
T  9685446 gtcagaacacgctttttcatgtttggccactttgcttgacgcggattttagggctgcctatcctacggtaaaaggtctgacacctaatcccacaagtggt 9685347  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || || |||||  |||||||||| ||||| ||| || |||||||||  | |||| | || ||||| || ||||||||||||| |||||    
T  9685346 gaaaccccagtcaagtctacacaatcatgttttccacctacccatatgcacaccataatgtttgcaggcctgagtgttgaccttctatctagtgggtcag 9685247  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatc 728  Q
    || ||     |||||||||   |||| |||||||||| ||||| ||||||| |||||||||||    
T  9685246 tcagg-----aagttcacagaagcctccttcttcactaatacttccgcccgtctgaatatatc 9685189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 584 - 731
Target Start/End: Complemental strand, 41867821 - 41867679
Alignment:
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcac 683  Q
    ||||| ||||||||||| ||||| ||| |||||||||||||||  ||| | || ||||| |||||||||||||||| ||||||| ||     ||||||||    
T  41867821 acacaagcatgttttccacctacccatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtcagtcagg-----aagttcac 41867727  T
Q  684 atgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    | | |||| |||||||||||||| |||||||||  |||||||||||||    
T  41867726 aggtgcctccttcttcactgatattcccgcccgtatgaatatatcaaa 41867679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 550 - 731
Target Start/End: Complemental strand, 18744901 - 18744725
Alignment:
Q  550 taatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||| ||||||| |  ||||||||| || || ||||||||||||||||||||||| |||  |||||||||||||   ||| | || ||||| ||| ||    
T  18744901 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacacccgcaggcctgagtgttgatatt 18744802  T
Q  650 ctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    || ||||| | ||||     |||| ||| |||||| || |||||||||| ||||||||||| ||||| ||||||||||||||    
T  18744801 ctttctagcgggtca-----gtcaggaaattcacaggcaccttcttctttactgatactcctgcccgtctgaatatatcaaa 18744725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 496 - 667
Target Start/End: Original strand, 3825833 - 3826004
Alignment:
Q  496 tttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgt 595  Q
    ||||||||||   |||||||||| | ||| || ||| |||||||   |||||| |||||| ||||| | |  |||| || | || |||||||||||||||    
T  3825833 tttgcttgacgcagcttttagggctctctgtcataccgtaaaagtcctgacccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcatgt 3825932  T
Q  596 tttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||| |||||||||||||||||||| ||||||   ||||  |||  ||||||||||||||||||| |||||||    
T  3825933 ttttctcctactcatttgtacaccttaacatccacaagcataaaggtcgatcttctatctagtgggtcagtc 3826004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 586 - 649
Target Start/End: Original strand, 9675040 - 9675103
Alignment:
Q  586 acatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||    
T  9675040 acatgcatgttttcctcctactcattcgtacatcataacatctgcatgtctaagtgtcgatctt 9675103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 484 - 731
Target Start/End: Complemental strand, 20142753 - 20142511
Alignment:
Q  484 atgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattcc 583  Q
    ||||||||||  ||||||||||   |||||||| | || || |||||| ||||||| |  ||| | |||||| ||||||| |  | ||||| | || ||     
T  20142753 atgtttggccactttgcttgacgaagcttttagagctgcctgtcctacggtaaaaggtacgacacctaatcccacaagtggtgaagccccaatcaagtct 20142654  T
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcac 683  Q
    ||||| ||||||||||| ||||| |||  |||||||||||  | |||| || | ||||| ||||||||||||| || ||||||| ||     |||||||     
T  20142653 acacaagcatgttttccacctacccatccgtacaccataatgtctgcaggtttgagtgttgatcttctatctactgggtcagtcagg-----aagttcat 20142559  T
Q  684 atgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |  ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  20142558 agacgcctccttcttcactgatattcccgcccgtctgaatatatcaaa 20142511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 568 - 731
Target Start/End: Original strand, 28225178 - 28225336
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||||||| | || ||||||||||||||||||||||| || |||  ||||||||||||||  | | | |||||||||||| |||||||||||| || |       
T  28225178 aaccccattcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgtaggcctaagtgtcgatattctatctagtgggtaa--- 28225274  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
      ||||  ||||||||| || ||| | ||||||| |||||||||| || |||||||||||||||    
T  28225275 --gtcagaaagttcacaggcacctccctcttcaccgatactcccgaccacctgaatatatcaaa 28225336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 640 - 727
Target Start/End: Original strand, 5532669 - 5532758
Alignment:
Q  640 tgtcgatcttctatctagtgcgtcagtcgggtcaa--gaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatat 727  Q
    |||||||||||||||||||| ||||||| || | |  |||||||||| | |||| ||||||||||||||||||||| || ||||||||||    
T  5532669 tgtcgatcttctatctagtgggtcagtcaggactaaggaagttcacaggggcctccttcttcactgatactcccgctcgtctgaatatat 5532758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 549 - 655
Target Start/End: Complemental strand, 10579727 - 10579621
Alignment:
Q  549 ttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatct 648  Q
    |||||| |||||||| |  ||||||||| || |||||| ||||||||||||||||||| || | |||||||||||||| ||   | ||||||||||||||    
T  10579727 ttaatcatacaagtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctacccactcgtacaccataacatttgttggcctaagtgtcgatct 10579628  T
Q  649 tctatct 655  Q
    || ||||    
T  10579627 tccatct 10579621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 584 - 731
Target Start/End: Complemental strand, 16351752 - 16351610
Alignment:
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcac 683  Q
    ||||||||||||| || ||| || |||| ||| |||||||||| | ||  ||||||||| |||||||||| ||||  |||||||     || ||||||||    
T  16351752 acacatgcatgttgtcttccaacccattcgtataccataacatttacagatctaagtgttgatcttctatatagtaagtcagtc-----aaaaagttcac 16351658  T
Q  684 atgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||  || ||||| | |||| |||||||||| ||||||||||||||    
T  16351657 atgcgtttttttctttattgatgctcccgcccgtctgaatatatcaaa 16351610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 658
Target Start/End: Complemental strand, 23484887 - 23484777
Alignment:
Q  548 cttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatc 647  Q
    |||||||| ||||||| |  ||||||| | || || ||||||||||||||||||||||| |||  ||||| ||||||||||||| |  | ||||| ||||    
T  23484887 cttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacatcataacatatgcatgcttgagtgttgatc 23484788  T
Q  648 ttctatctagt 658  Q
    |||||| ||||    
T  23484787 ttctatatagt 23484777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 659
Target Start/End: Complemental strand, 13147048 - 13146972
Alignment:
Q  583 cacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
    ||||||| | ||||||| |||||| |||  |||||||||||||| | || | |||| ||||||||||||||||||||    
T  13147048 cacacatccgtgttttcttcctacccatgcgtacaccataacatctacatgcctaaatgtcgatcttctatctagtg 13146972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 461
Target Start/End: Complemental strand, 4413300 - 4413201
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||| ||| |||||| || ||||||||   ||||||| || ||||||||||| || | |||| || ||| |||| ||||||||||||||    
T  4413300 tgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctaggagacatga 4413201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 461
Target Start/End: Complemental strand, 19162017 - 19161918
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||||||  | |||| || ||| ||| || ||||||| |||||||||||||| ||| ||||| | |||| || | ||||||||||||||    
T  19162017 tgaatagaaagcaagcggacagcaagctgcgccactacgtctttttggatgacaaaatcaatcctcgaaaacacactattcattgacctaggagacatga 19161918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 19161696 - 19161614
Alignment:
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagt 666  Q
    ||||||||||||||||||||||| |||   |||| ||||||||  ||| | || ||||| ||||||||||||| || ||||||    
T  19161696 acacatgcatgttttcctcctacccatccttacatcataacatccgcatgcctgagtgttgatcttctatctaatgggtcagt 19161614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 44190189 - 44190139
Alignment:
Q  411 tgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||||||||||||| ||||||| |||||| | |||| |||||||||    
T  44190189 tgacaaaatcaatcatcgtgaacataacatttatagacctacgagacatga 44190139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 466 - 731
Target Start/End: Complemental strand, 50000956 - 50000696
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||| ||  ||||||||||   |||||||| | ||||| |||||| ||||||||    |||| | | || ||||||| |    
T  50000956 gtcagaacacgctttctcatgtttgaccactttgcttgacgcagcttttagagctgtctgtcctaccgtaaaagcccccaccccttaacccacaagtggt 50000857  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || ||||||||||||||||||||||| || |||  ||||||||||||||  ||| | ||||||||||||||||||||||||| ||||     
T  50000856 gaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtca- 50000758  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
        ||||  ||||||||| |||||| |||||||| ||||||||| || |||||||||||||||||    
T  50000757 ----gtcagaaagttcacaggcgcctccttcttcattgatactcctgctcgcctgaatatatcaaa 50000696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 510 - 731
Target Start/End: Complemental strand, 30940726 - 30940510
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    ||||||||||||||| |||||  ||||||| |||||| |||||||| |||||||    |||| |||| || || ||||| ||||||||||| ||||| ||    
T  30940726 cttttagggttgtctgtcctatggtaaaaggtttgacacttaatcccacaagtggcgaaacctcagtcaagtctacacaagcatgttttccacctaccca 30940627  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactc 709  Q
    || ||||||||||||||  | | | || ||||| |||||||||||||||| ||||||| ||     ||||||||| | |||| |||||||||||||| ||    
T  30940626 ttcgtacaccataacattcgtaggccttagtgttgatcttctatctagtgggtcagtcagg-----aagttcacaggtgcctccttcttcactgatattc 30940532  T
Q  710 ccgcccgcctgaatatatcaaa 731  Q
    ||||||| ||||||||||||||    
T  30940531 ccgcccgtctgaatatatcaaa 30940510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 568 - 731
Target Start/End: Original strand, 3330128 - 3330286
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||||||||| || |||||||||||| |||||||||| |  |||  |||||||||||||| |||| | |||||||| |||||||||||||||| ||||       
T  3330128 aaccccagtcaagtccacacatgcacgttttcctccaatccatccgtacaccataacatctgcatgcctaagtgttgatcttctatctagtgggtca--- 3330224  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
      ||||  ||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||    
T  3330225 --gtcagaaagttcacaggtgcctccttcttcactgatactcccgctcgcctgaatatatcaaa 3330286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 478 - 731
Target Start/End: Original strand, 132473 - 132722
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctaca--gtaaaagctttgacccttaatcctacaagtgatagaaccccag 575  Q
    ||||| |||||| ||| |||||||||||   |||||||||| || || |||||||  |||||||    ||||| |||||| ||||||| |  ||||||||    
T  132473 tttctcatgttttgccattttgcttgacgcagcttttagggctgcctgtcctacaccgtaaaagtcccgacccctaatccaacaagtggtgaaaccccag 132572  T
Q  576 tgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaag 675  Q
    | || | ||||||||||| ||||||||||||  || ||||||||||||||| |||| | | |||||||||||||||||||||||     | |  ||||||    
T  132573 tcaagttcacacatgcatattttcctcctacgtatctgtacaccataacatctgcatgccgaagtgtcgatcttctatctagtg-----gaccagtcaag 132667  T
Q  676 aagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||||||||||  |  || |||||| ||||||| ||||||||||||||||||||    
T  132668 aagttcacatgcg-atcttttttcactaatactcctgcccgcctgaatatatcaaa 132722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 581 - 723
Target Start/End: Original strand, 25706700 - 25706837
Alignment:
Q  581 tccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagtt 680  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||| | | |  |||||||||||||||||||||||| ||||     ||||  |||||    
T  25706700 tccacacatgcatgtttttctcctacccatctgtacaccataacatacgtaggcttaagtgtcgatcttctatctagtgggtca-----gtcagaaagtt 25706794  T
Q  681 cacatgcgccttcttcttcactgatactcccgcccgcctgaat 723  Q
    ||||||||||| |||||||||| ||||| | | ||||||||||    
T  25706795 cacatgcgcctccttcttcacttatacttctgaccgcctgaat 25706837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 510 - 731
Target Start/End: Original strand, 26521608 - 26521824
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    ||||||||||||| | ||||||  |||||| | |||||| |||||| |||||||||  ||| ||||| || |||| ||||||||||||||||||||| |     
T  26521608 cttttagggttgtttgtcctaccataaaaggtctgacccctaatcccacaagtgatgaaactccagtcaagtccatacatgcatgttttcctcctacccg 26521707  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactc 709  Q
    | ||||||||||||| |  | | |  ||| |||||||||||||||||||| ||||     ||||  ||| ||||||||||||  ||||||| ||||||||    
T  26521708 tctgtacaccataaccttcgtaggcttaaatgtcgatcttctatctagtgggtca-----gtcagaaagctcacatgcgcctcattcttcaatgatactc 26521802  T
Q  710 ccgcccgcctgaatatatcaaa 731  Q
     || ||| || |||||||||||    
T  26521803 tcgtccgtctaaatatatcaaa 26521824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 478 - 642
Target Start/End: Original strand, 53619674 - 53619838
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtg 577  Q
    ||||| ||||||||||  ||||||||||   ||||||||||||| || |||||| ||||||||    |||  ||| || ||||||| |  |||||||||     
T  53619674 tttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtcctactgtaaaagcccccacctctaaacccacaagtggtgaaaccccagtc 53619773  T
Q  578 aattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgt 642  Q
    || ||||||||||||||||||||||| ||||||  ||||||||||||||||||| | ||||||||    
T  53619774 aagtccacacatgcatgttttcctccaactcatccgtacaccataacatatgcaggcctaagtgt 53619838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 478 - 731
Target Start/End: Original strand, 31847175 - 31847420
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtg 577  Q
    ||||| ||||||| ||  ||||||||||   |||||||||| || || |||||| ||||||||    |||| ||| || ||||||| |  ||||| |||     
T  31847175 tttctcatgtttgaccactttgcttgacgcagcttttagggctgcctgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaaccctagtc 31847274  T
Q  578 aattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaa 677  Q
    || ||||||||||||||||||||||| |  ||| |||||||||||| || |||| | ||||||||| ||||| ||||||||| ||||     ||||  ||    
T  31847275 aagtccacacatgcatgttttcctccaatccatctgtacaccataatatctgcaggcctaagtgtcaatcttttatctagtgggtca-----gtcagaaa 31847369  T
Q  678 gttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||||||| ||||   || |||||||||||||||| | |||||||||||||||||    
T  31847370 gttcacaggcgc---ctccttcactgatactcccactcgcctgaatatatcaaa 31847420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 581 - 731
Target Start/End: Original strand, 16957727 - 16957872
Alignment:
Q  581 tccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagtt 680  Q
    |||||||||||||||||| | ||||| |||  |||||||||||||| |||| | |||||||| |||||| ||||||| | ||||     |||| ||||||    
T  16957727 tccacacatgcatgttttacacctacccatccgtacaccataacatctgcaggcctaagtgttgatcttttatctagcgggtca-----gtcaggaagtt 16957821  T
Q  681 cacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||| |||||| || | ||||||||||||| ||||| ||||||||||||||    
T  16957822 cacaggcgcctcctacctcactgatactcctgcccgtctgaatatatcaaa 16957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 510 - 659
Target Start/End: Complemental strand, 56462094 - 56461945
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    |||||||||| |||||| | || |||||||  | ||||| |||||| |||| || |  |||| |||| || |||||||||||||||||||| ||||||||    
T  56462094 cttttagggtggtctatacaaccgtaaaagtctcgacccctaatccaacaaatggtgaaacctcagtcaagtccacacatgcatgttttccacctactca 56461995  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
    |  ||||||||||||||  ||| |  ||||||||||||||||||||||||    
T  56461994 tccgtacaccataacattcgcatgcttaagtgtcgatcttctatctagtg 56461945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 510 - 666
Target Start/End: Complemental strand, 12918359 - 12918203
Alignment:
Q  510 cttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactca 609  Q
    ||||||||||||| | |||||| ||||||||   ||  |||||||| |||||||||  ||| ||||| || | |||||||||||||||||||| ||| ||    
T  12918359 cttttagggttgtttgtcctaccgtaaaagccccgaatcttaatcccacaagtgatgaaactccagtcaactacacacatgcatgttttcctcttaccca 12918260  T
Q  610 tttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagt 666  Q
    |   |||||||| ||||   || | ||||||||||||||||||||||||| ||||||    
T  12918259 tccatacaccatgacatccacaggcctaagtgtcgatcttctatctagtgggtcagt 12918203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 727
Target Start/End: Original strand, 12053602 - 12053743
Alignment:
Q  581 tccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagtt 680  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||| ||||   | |||| ||||||||||||||||||  |||     |||| ||||||    
T  12053602 tccacacatgcatgttttcctcctacccatctgtacaacataacatctgcagaccaaagtctcgatcttctatctagtggatca-----gtcaggaagtt 12053696  T
Q  681 cacatgcgccttcttcttcactgatactcccgcccgcctgaatatat 727  Q
     ||| ||| |  ||||||||||||||||| ||  |||||||||||||    
T  12053697 tacaagcgtccacttcttcactgatactctcgtgcgcctgaatatat 12053743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 731
Target Start/End: Original strand, 25504415 - 25504629
Alignment:
Q  512 tttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatt 611  Q
    |||||||||| || || ||| |||||||   |||| | |||||| ||||||| |  |||| |||| || || | ||||||||||||| ||||||| |||     
T  25504415 tttagggttgcctgtcataccgtaaaaggcctgacgcctaatcccacaagtggtgaaacctcagtcaagtctatacatgcatgtttttctcctacccatc 25504514  T
Q  612 tgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactccc 711  Q
     ||||||||||||||  ||| |||| |||||  | ||||||||||||| |||  ||     |||||||||||||| ||||  |||||||||||| ||| |    
T  25504515 cgtacaccataacatccgcatgtctgagtgttaaacttctatctagtgggtctatc-----aagaagttcacatgtgcctcgttcttcactgatgctctc 25504609  T
Q  712 gcccgcctgaatatatcaaa 731  Q
    |||||  |||||||||||||    
T  25504610 gcccgtttgaatatatcaaa 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 676 - 731
Target Start/End: Original strand, 34952452 - 34952507
Alignment:
Q  676 aagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  34952452 aagttcacatgcgcctccttcttcactgatactctcgcccgccttaatatatcaaa 34952507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 50001161 - 50001063
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    |||||||| | ||||||||| |||||| || |||||||| | ||||||| || ||||||||||| ||||||||| || ||||||||  |||||||||||    
T  50001161 atgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaacatttatggatctaggagacat 50001063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 4419136 - 4419233
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    |||||||| | ||||||||| |||||| || |||||||| | ||||||| || ||||| ||||||||||||||| || ||| |||| ||||||||||||    
T  4419136 atgaataggaggcaagcgggcaacaagctgcgccgctagat-tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctaggagacat 4419233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 581 - 659
Target Start/End: Original strand, 18534591 - 18534669
Alignment:
Q  581 tccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
    ||||||||||||||||||||| |||| |||  ||| |||||||||| || | | |||||||||||||||| ||||||||    
T  18534591 tccacacatgcatgttttccttctacccatccgtataccataacatttgtaggcctaagtgtcgatcttcaatctagtg 18534669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 461
Target Start/End: Original strand, 23242796 - 23242872
Alignment:
Q  385 aagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||||| |||   ||||||| | |||||||||||||||||||||| ||||||||||| |||| |||| ||||    
T  23242796 aagttgtgccgttagagctttttggataacaaaatcaatcatcgtaaacacaatatttatggacctaagagaaatga 23242872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 656
Target Start/End: Complemental strand, 55933483 - 55933303
Alignment:
Q  476 actttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccag 575  Q
    ||||||| ||||||||||  |||| |||||    ||||||||| || || |||||| ||||||||  |||||||||| || ||||| | |  |||||| |    
T  55933483 actttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctaccgtaaaagccctgacccttaaacccacaaggggtgaaaccccgg 55933384  T
Q  576 tgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatcta 656  Q
    | || | || |||| ||||||||||||| || |||  ||| |||||||||| |||    ||||||||||||||||||||||    
T  55933383 ttaaattcagacattcatgttttcctccaacccatccgtagaccataacatctgcggacctaagtgtcgatcttctatcta 55933303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 3329869 - 3329966
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    ||||||| | ||||||||| |||||| || ||||||||   ||||||| || ||||| ||||||||||||||| |  ||| |||| ||||||||||||    
T  3329869 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctaggagacat 3329966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 6865727 - 6865654
Alignment:
Q  583 cacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatcta 656  Q
    |||||||||||||||||||||||| |||  ||||| ||||||||  |||   ||||||||| ||||||||||||    
T  6865727 cacacatgcatgttttcctcctacccatacgtacatcataacatccgcatacctaagtgtcaatcttctatcta 6865654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 458
Target Start/End: Original strand, 39001269 - 39001366
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagaca 458  Q
    |||||||| | ||||||||| |||||  || ||||||||   ||||||| |||||||| ||||| ||||||||| || ||| |||| |||||||||||    
T  39001269 atgaataggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctaggagaca 39001366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 600711 - 600651
Alignment:
Q  478 tttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaa 538  Q
    ||||| |||||||| |  ||||||||||||  ||||||||||||||| |||||||||||||    
T  600711 tttctcatgtttggtcactttgcttgacataacttttagggttgtctgtcctacagtaaaa 600651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 16955387 - 16955432
Alignment:
Q  416 aaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||||||| || ||| |||||||||||||||||||    
T  16955387 aaatcaatcctcgtaaacacaacattcatgggcctaggagacatga 16955432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 568 - 731
Target Start/End: Original strand, 29861975 - 29862133
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||||||||| || | |||||||||||||||||||||||| |||  |||||||||||||| |||| | ||||||||||||||||||||||||| | ||       
T  29861975 aaccccagtcaagttcacacatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagtgtcgatcttctatctagtgggcca--- 29862071  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
      | ||||||||||||||| ||||  ||||||||| ||||||||||| ||||||||||||||||    
T  29862072 --gacaagaagttcacatgtgcctctttcttcactaatactcccgcctgcctgaatatatcaaa 29862133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 466 - 714
Target Start/End: Complemental strand, 39583260 - 39583017
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  ||||||||||   |||||||||| || |||||||||  |||| |    |||||||||||| ||||||| |    
T  39583260 gtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttagggctgcctatcctaccataaatggcccgacccttaatcccacaagtggt 39583161  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
    | ||||  ||| || ||||| |||||||||||||||||||| |||  |||||| |||||||  ||| | ||||||||||||||||||||||||| ||||     
T  39583160 aaaacctaagtcaagtccacgcatgcatgttttcctcctacccatccgtacactataacatccgcatgcctaagtgtcgatcttctatctagtgggtca- 39583062  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcc 714  Q
         |||  |||||||||| ||||| ||||||||||||||||||||||    
T  39583061 ----atcagaaagttcacatacgcctccttcttcactgatactcccgcc 39583017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 550 - 731
Target Start/End: Complemental strand, 52741458 - 52741282
Alignment:
Q  550 taatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||| ||||||| |  |||| |||| || || ||||| ||||||||||| ||||| |||  ||| |||| ||||| ||||||||| ||||| ||||||    
T  52741458 taatcccacaagtggtgaaacctcagtcaagtctacacaagcatgttttccacctacccatccgtataccacaacatctgcaagtctgagtgttgatctt 52741359  T
Q  650 ctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||||||| ||||||| ||     |||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  52741358 ctatctagtgggtcagtcagg-----aagttcacatacgcctccttcttcactgatattcccgcccgtctgaatatatcaaa 52741282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 466 - 731
Target Start/End: Original strand, 53785785 - 53786045
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| ||||||  |||||||||   || ||||||  |||||| |||| || ||||||||| |||||||    ||| | |||||| || |||| |    
T  53785785 gtcagaacacgctttctcgtgtttggccaccttacttgacgcggctttaagggctgcctatcctacggtaaaaggcccgacacctaatcccactagtggt 53785884  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || || ||||||||||||||||||||||| |||  |||||||| |||||  ||| | || ||||| |||||| | ||||| | |||||    
T  53785885 gaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccaaaacatccgcatgcctgagtgttgatcttatttctagcgggtcag 53785984  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |  ||     |||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||    
T  53785985 ttagg-----aagttcacatgcgcttccttcttcactgatactcctgcccgtctgaatatatcaaa 53786045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 545 - 731
Target Start/End: Original strand, 7901013 - 7901188
Alignment:
Q  545 acccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcg 644  Q
    |||| |||||| ||||||| |  ||||||||| || |||||||||||||||||||||||||| ||| | ||||||||||||||| |        |||| |    
T  7901013 acccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctacacatctatacaccataacatatac------gggtgttg 7901106  T
Q  645 atcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||||||||||||||| ||||     ||||  ||||||||| ||| || ||||||||  |||||| |||||||||| |||||||||||    
T  7901107 atcttctatctagtgagtca-----gtcagaaagttcacaggcgtctccttcttcatcgatacttccgcccgcctaaatatatcaaa 7901188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 731
Target Start/End: Original strand, 49018157 - 49018299
Alignment:
Q  584 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcac 683  Q
    ||||||||||||||||||| |||  ||  |||||||||||||| |||| | || |||||  ||||||||||||||| ||||     |||| |||||||||    
T  49018157 acacatgcatgttttcctcgtaccaatccgtacaccataacatctgcatgcctgagtgttaatcttctatctagtgggtca-----gtcaggaagttcac 49018251  T
Q  684 atgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
       | |||| |||||||| |||||||| ||||| ||||||||||||||    
T  49018252 tgacaccttattcttcaccgatactcctgcccgtctgaatatatcaaa 49018299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 26772630 - 26772728
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    |||||||| | ||||||||| |||||| || ||||||||   ||||||| || ||||||||||| ||||||||| || ||| |||| ||||||||||||    
T  26772630 atgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctaggagacat 26772728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 52412084 - 52412026
Alignment:
Q  403 tttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||| || ||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  52412084 tttttggatggcaaaatcaatcattgtaaacacaatatttatgggtctaggagacatga 52412026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 727
Target Start/End: Original strand, 35236412 - 35236460
Alignment:
Q  679 ttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatat 727  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  35236412 ttcacatgcgcctccttcttcactcatactcccgcccgcctaaatatat 35236460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 32546668 - 32546767
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||||||| |||||| || ||||||||   ||||||| || ||||| ||||| |||| |||| || ||| |||| ||||||||||||||    
T  32546668 tgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctaggagacatga 32546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 581 - 725
Target Start/End: Original strand, 37992523 - 37992662
Alignment:
Q  581 tccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagtt 680  Q
    ||||||||  |||||||||||||||| |||  ||||| |||||||| | ||   ||||||||| |||||||||| |||| ||||     || |  |||||    
T  37992523 tccacacacacatgttttcctcctacccatccgtacatcataacatctacagacctaagtgtccatcttctatcaagtgggtca-----gtgagaaagtt 37992617  T
Q  681 cacatgcgccttcttcttcactgatactcccgcccgcctgaatat 725  Q
    ||||||  ||| ||| |||||||||| ||||| ||||||||||||    
T  37992618 cacatgaccctcctttttcactgatattcccgaccgcctgaatat 37992662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 461
Target Start/End: Complemental strand, 39583464 - 39583364
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatg 460  Q
    |||||||||| |||||| |  ||||||||| ||||||||   ||||||| || ||||||||||| |||||||||  | ||| |||  |||||||||||||    
T  39583464 atgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctaggagacatg 39583365  T
Q  461 a 461  Q
    |    
T  39583364 a 39583364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 53785582 - 53785681
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||||||| |||||| |  |||||| |   || |||| || ||||| ||||| |||||||||||| ||| |||| ||||||||||||||    
T  53785582 tgaatagaaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatcctcgtaaacataacattcatggacctaggagacatga 53785681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 4669856 - 4669798
Alignment:
Q  403 tttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||| | |||||||||||||||||||||| || ||| |||| || |||||||||||    
T  4669856 tttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggagacatga 4669798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 461
Target Start/End: Original strand, 38145978 - 38146028
Alignment:
Q  411 tgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    |||||||||||||||||||||||| ||  || |||| ||||||||||||||    
T  38145978 tgacaaaatcaatcatcgtaaacacaacgttcatggacctaggagacatga 38146028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 7502245 - 7502160
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgg 446  Q
    ||||||||||| |||||  | |||||| || | | |||||| ||||||| |  |||||||||| ||||||||||||||||| ||||    
T  7502245 atgaatagaatacaagcaagcaacaagctgagtcactaggtctttttggatagcaaaatcaattatcgtaaacataatattcatgg 7502160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 466 - 731
Target Start/End: Original strand, 39434743 - 39435003
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  ||||||||||    ||||||| | |  || |||||| |||||||| |  |||| ||| || ||||||| |    
T  39434743 gtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactgtaaaagcctccacccctaaacccacaagtggt 39434842  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || | ||||||||||||||||||||| || |||  ||||||||||||||   ||   ||||||||||||||||||||||||| |||||    
T  39434843 gaaaccccagtcaagtacacacatgcatgttttcctccaacccatccgtacaccataacatcgacagacctaagtgtcgatcttctatctagtgggtcag 39434942  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    || |      ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  39434943 tcaga-----aagttcacaggcgcctccttcttcactgatactcccgctcgcctgaatatatcaaa 39435003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 472 - 705
Target Start/End: Complemental strand, 25021839 - 25021611
Alignment:
Q  472 acacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaacc 571  Q
    ||||||||||| || |||  ||  |||||||||||   ||||||||| ||| | || ||| |||||| | | ||||| |||||| ||||||| |  |||     
T  25021839 acacactttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaact 25021740  T
Q  572 ccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggt 671  Q
    || || || |||||||||||||||||||||||||| |||  |||||||||||||| |||| | ||||||| ||||||||||||||||| ||||     |     
T  25021739 ccggtcaagtccacacatgcatgttttcctcctacccatccgtacaccataacatctgcaggcctaagtgacgatcttctatctagtgggtca-----ga 25021645  T
Q  672 caagaagttcacatgcgccttcttcttcactgat 705  Q
    |||||||||||||||||| | |||||||||||||    
T  25021644 caagaagttcacatgcgcttccttcttcactgat 25021611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 477 - 714
Target Start/End: Complemental strand, 35740006 - 35739775
Alignment:
Q  477 ctttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagt 576  Q
    |||||| ||||||||||  ||||||| |||   ||||||||| ||||| |||||| |||||||    |||| ||||||| || |||| |  |||||||||    
T  35740006 ctttctcatgtttggccactttgcttaacacaacttttagggatgtctgtcctaccgtaaaaggcccgacc-ttaatcccactagtggtgaaaccccagt 35739908  T
Q  577 gaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaaga 676  Q
     || |||||||||||||||||||||||||| ||||  ||||||||||||| |||| | |||||||| ||||||||| | | || ||||     ||||  |    
T  35739907 caagtccacacatgcatgttttcctcctacccattcatacaccataacatctgcatgcctaagtgttgatcttctaccaaatgggtca-----gtcagaa 35739813  T
Q  677 agttcacatgcgccttcttcttcactgatactcccgcc 714  Q
    |||||||| || ||| ||||||||||||||||||||||    
T  35739812 agttcacaggcacctccttcttcactgatactcccgcc 35739775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 731
Target Start/End: Original strand, 24125115 - 24125364
Alignment:
Q  477 ctttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagt 576  Q
    |||||| |||||||||| ||||||||||    |||||||||| ||  | ||| || |||||||    ||| | |||||| ||||||| |  |||||||||    
T  24125115 ctttctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagt 24125214  T
Q  577 gaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaaga 676  Q
     || || |||||||||||||||| |||||| | |  ||| ||||||||||||||| | || ||||| |||||||||||||||| ||||||| ||     |    
T  24125215 caagtctacacatgcatgttttcttcctacccgtcagtagaccataacatatgcaggcctgagtgttgatcttctatctagtgggtcagtcagg-----a 24125309  T
Q  677 agttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||| |||  ||||| || ||||||| || |||| ||||| || |||||||||||    
T  24125310 agttgacagacgcctcctacttcactaatgctcctgcccgtctaaatatatcaaa 24125364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 731
Target Start/End: Complemental strand, 42922052 - 42921898
Alignment:
Q  572 ccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggt 671  Q
    ||||| || ||||||||||  |||||||||||||| ||| ||||||||||||||| | ||    |||||||| ||||||||| ||||| || |     ||    
T  42922052 ccagtcaagtccacacatgtttgttttcctcctacccatctgtacaccataacatctacatacgtaagtgtcaatcttctatatagtgagtaa-----gt 42921958  T
Q  672 caagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    ||||||||||| | | | || ||||||||| |||||| || |||||||||||||||||||    
T  42921957 caagaagttcataggggtctccttcttcaccgatacttcctcccgcctgaatatatcaaa 42921898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 667
Target Start/End: Complemental strand, 11611177 - 11611078
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgca-agtctaagtgtcgatcttctatctagtgcgtcagt 666  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||  ||||||||||||| |||| |   ||||| || ||||||||||||||| ||||||    
T  11611177 aacccctgtgaagtccacacatgcatgttttcc-cctacccattcatacaccataacatttgcagaccttaagtttcaatcttctatctagtgggtcagt 11611079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 461
Target Start/End: Original strand, 38815166 - 38815266
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatg 460  Q
    |||||||||| ||||||||| |||||| || ||||||| |  ||||||| ||  |||| ||||| ||||||||| || ||| |||| |||||||||||||    
T  38815166 atgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctaggagacatg 38815265  T
Q  461 a 461  Q
    |    
T  38815266 a 38815266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 8540594 - 8540531
Alignment:
Q  382 aacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatg 445  Q
    |||||||||||| |||| || ||||||| ||| |||||||||||||||||||| || |||||||    
T  8540594 aacaagttgtgctgctacgtctttttggatgataaaatcaatcatcgtaaacacaacatttatg 8540531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 6618175 - 6618257
Alignment:
Q  379 ggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||||| ||| | ||||||| |||||||| ||||  |||||||||||| ||| |||| |||| |||||||||    
T  6618175 ggtaacaagctgtgccgttagatctttttggatgacaaaaccaatactcgtaaacataacattcatggacctatgagacatga 6618257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 710
Target Start/End: Original strand, 8116087 - 8116126
Alignment:
Q  671 tcaagaagttcacatgcgccttcttcttcactgatactcc 710  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  8116087 tcaagaagttcacatgcgcctccttcttcattgatactcc 8116126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 563
Target Start/End: Original strand, 38815370 - 38815467
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtg 563  Q
    ||||| |||| |||||| ||||||||||  |||| ||| | |||||||||||| ||||| ||||||  |||||||   ||||| |||||| |||||||    
T  38815370 gtcagaacacgctttctcatgtttggccactttgtttggcgtggcttttagggctgtctgtcctaccataaaagccccgacccctaatcccacaagtg 38815467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 623
Target Start/End: Original strand, 38815476 - 38815517
Alignment:
Q  582 ccacacatgcatgttttcctcctactcatttgtacaccataa 623  Q
    ||||||||||||||||||||||||| |||  |||||||||||    
T  38815476 ccacacatgcatgttttcctcctacccatccgtacaccataa 38815517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 466 - 731
Target Start/End: Original strand, 34644642 - 34644902
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| |||| |||||| ||||||||||  |||| |||||    ||||||||||||  | |||||| ||||||||   ||||| ||| || ||||||| |    
T  34644642 gtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtggt 34644741  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || |||||||||||||||||||||||  | |||   |||||||||||||  |||   ||||||||||||||||||||||||| ||||     
T  34644742 gaaaccccagtcaagtccacacatgcatgttttcctccagcccatccatacaccataacatccgcatacctaagtgtcgatcttctatctagtgggtca- 34644840  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
        ||||  ||||||||| |||| | ||||||||||||||||||||||| |||||||||||||||    
T  34644841 ----gtcagaaagttcacacgcgcttccttcttcactgatactcccgccctcctgaatatatcaaa 34644902  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 466 - 731
Target Start/End: Complemental strand, 28041158 - 28040898
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| ||||||||||| ||||||||||  |||| |||||  || |||||| | || ||||||||| ||||||| |  ||| | |||||| ||||||  |    
T  28041158 gtcagaacacactttctcatgtttggccactttgtttgacgcggattttagagctgcctatcctacggtaaaaggtccgacacctaatcccacaagtagt 28041059  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
      ||||||||| || || ||||| ||||||||||| ||||| ||| ||||||||||||||| |||| | || ||||| |||||||||||||||| || |     
T  28041058 gaaaccccagtcaagtctacacaagcatgttttccacctacccatctgtacaccataacatctgcaggcctgagtgttgatcttctatctagtgggtta- 28040960  T
Q  666 tcgggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
        |||| ||||||||||  ||||| |||||||||||||| || ||| || || |||||||||||    
T  28040959 ----gtcaggaagttcacagacgcctccttcttcactgatattctcgcacgtctaaatatatcaaa 28040898  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 495 - 731
Target Start/End: Complemental strand, 37932220 - 37931989
Alignment:
Q  495 ttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatg 594  Q
    ||||||||||||   ||||||||| ||||| || ||| |||||||| ||| ||| |||||| ||||||| |  |||| || | || ||||| ||||||||    
T  37932220 ttttgcttgacacaacttttagggctgtctgtcttactgtaaaagccttggcccctaatcccacaagtggtgaaacctcaatcaagtccacgcatgcatg 37932121  T
Q  595 ttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgccttct 694  Q
    ||||||||||   ||| |||||| ||||||||  ||| | |||||||||||| ||||||||| || |||     |||||  ||||||| | ||| || ||    
T  37932120 ttttcctcctgtccatatgtacatcataacatccgcaggcctaagtgtcgattttctatctaatgggtc-----ggtcagaaagttcaaaagcgtctcct 37932026  T
Q  695 tcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||||||| |||||||||||||||| |||| ||||||    
T  37932025 tcttcacttatactcccgcccgcctaaatacatcaaa 37931989  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 568 - 731
Target Start/End: Complemental strand, 29169723 - 29169565
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||||||||| || || |||||||||||||||||||||||  ||  ||||||||||||||  ||| | || ||||| |||||||| ||||| | |||||||    
T  29169723 aaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgcaggcctgagtgttgatcttctttctagcgggtcagtc 29169624  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
     ||     ||||||||| |||||| |||||||||||||||||  ||||| ||||||||||||||    
T  29169623 agg-----aagttcacaggcgcctccttcttcactgatactcatgcccgtctgaatatatcaaa 29169565  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 361 - 458
Target Start/End: Complemental strand, 6790898 - 6790800
Alignment:
Q  361 atgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgac-aaaatcaatcatcgtaaacataatatttatgggcctaggagaca 458  Q
    |||||||||| ||| |||||||||||  ||||||||||||| ||||||| |||| |||||| || ||||||||||||| ||| |||| ||||| |||||    
T  6790898 atgaatagaaggcaggcgggtaacaaactgtgccgctaggtctttttggatgacaaaaatctattatcgtaaacataacattcatggacctagaagaca 6790800  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 4611062 - 4611161
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    |||||| || ||||||||  |||||| ||||| | |||   ||||||| ||||||||||||||||||| |||| |||||| |||| ||||||||||||||    
T  4611062 tgaataaaaggcaagcggacaacaagctgtgctgttagacctttttggatgacaaaatcaatcatcgtgaacacaatattcatggacctaggagacatga 4611161  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 550 - 657
Target Start/End: Complemental strand, 45659594 - 45659487
Alignment:
Q  550 taatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatctt 649  Q
    |||||| ||||||| |  ||||||||| || || || |||||||||||||||||||| ||| ||||||| ||||||| |||| | || ||||| ||||||    
T  45659594 taatcccacaagtggtgaaaccccagtcaagtctacgcatgcatgttttcctcctacccatctgtacactataacatgtgcatgcctgagtgttgatctt 45659495  T
Q  650 ctatctag 657  Q
    || |||||    
T  45659494 ctttctag 45659487  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 544 - 653
Target Start/End: Complemental strand, 4861942 - 4861833
Alignment:
Q  544 gacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtc 643  Q
    ||||| |||||| ||||||| |  ||| ||||| || |||||||||||||||||| ||||||| |||  |||||||||||||| || | |   |||||||    
T  4861942 gacccctaatccaacaagtggtgaaacaccagtcaaatccacacatgcatgtttttctcctacccatccgtacaccataacatctgtaggctgaagtgtc 4861843  T
Q  644 gatcttctat 653  Q
    ||||||||||    
T  4861842 gatcttctat 4861833  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 568 - 727
Target Start/End: Original strand, 38731758 - 38731912
Alignment:
Q  568 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    ||||| ||| || ||||||  ||||| |||||||||||| |||  | ||||||||| || ||||||| ||| | |||||||||||||||||| ||||       
T  38731758 aaccctagtcaaatccacatttgcatattttcctcctacccatccgcacaccataatatctgcaagtttaactatcgatcttctatctagtgggtca--- 38731854  T
Q  668 gggtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatat 727  Q
      || | |||||||| | |  ||| ||||||||||||||||||| || |||| |||||||    
T  38731855 --gtaaggaagttcatagggacctccttcttcactgatactcccacctgcctaaatatat 38731912  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 656
Target Start/End: Complemental strand, 25375812 - 25375674
Alignment:
Q  518 gttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtaca 617  Q
    ||||||| |||||| ||||||||| |||||| |||||| || |||  |  |||||  || || ||||| | ||||||||||||| |||| |||  ||| |    
T  25375812 gttgtctgtcctaccgtaaaagctctgacccctaatccgacgagtagtgaaaccctggtcaaatccacgcttgcatgttttccttctacccatccgtata 25375713  T
Q  618 ccataacatatgcaagtctaagtgtcgatcttctatcta 656  Q
    ||||||||| ||||   ||||||||| ||||||||||||    
T  25375712 ccataacatctgcagacctaagtgtcaatcttctatcta 25375674  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 665
Target Start/End: Original strand, 37200174 - 37200255
Alignment:
Q  583 cacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcag 665  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||| | |||   |||||||| ||||||||||||||| |||||    
T  37200174 cacacatgcatgttttcctcttacccattggtaccccataacat-ttcaaacttaagtgtcaatcttctatctagtgggtcag 37200255  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 731
Target Start/End: Complemental strand, 7794748 - 7794687
Alignment:
Q  670 gtcaagaagttcacatgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
    |||| ||||| | ||||||||| | |||||| |||||||||||||||||||||| |||||||    
T  7794748 gtcaggaagtgcgcatgcgcctccctcttcaatgatactcccgcccgcctgaatttatcaaa 7794687  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 459
Target Start/End: Original strand, 34644451 - 34644536
Alignment:
Q  374 aagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    ||||||| |||||  || ||||||||   ||||||| || ||||||||||||||||||||| || ||| |||| ||||||||||||    
T  34644451 aagcgggcaacaaactgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctaggagacat 34644536  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 659
Target Start/End: Complemental strand, 43831512 - 43831435
Alignment:
Q  582 ccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
    |||||||| ||||| ||||| |||| | |  ||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  43831512 ccacacatccatgtattccttctacccgtccgtacaccataacatatgtaagcctaaatgtcgatcttctatttagtg 43831435  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 655
Target Start/End: Complemental strand, 22375538 - 22375479
Alignment:
Q  596 tttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatct 655  Q
    |||||||||||  ||| ||||||||||||||  ||| | |||||||||||||||||||||    
T  22375538 tttcctcctaccaattcgtacaccataacattcgcaggcctaagtgtcgatcttctatct 22375479  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 659
Target Start/End: Original strand, 42920061 - 42920128
Alignment:
Q  592 atgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
    ||||||||||||||| ||| |||||||| |||||| |||||| |||| ||| |||||| ||| |||||    
T  42920061 atgttttcctcctacccatctgtacaccttaacatctgcaagcctaaatgttgatcttttatttagtg 42920128  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 2764367 - 2764449
Alignment:
Q  377 cgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacat 459  Q
    ||||||||||| || |||||||    ||||||| ||  |||||||||||||||||||| || |||||||| |||| |||||||    
T  2764367 cgggtaacaagctgcgccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacat 2764449  T

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Target: scaffold0186 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 731
Target Start/End: Original strand, 19916 - 20057
Alignment:
Q  585 cacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcaca 684  Q
    ||||||||||||||||||||||  ||  |||||||||||||| | || ||||||||||  ||||||||||||||| ||||     || |||||||||| |    
T  19916 cacatgcatgttttcctcctacctatccgtacaccataacatctacaggtctaagtgttcatcttctatctagtgggtca-----gttaagaagttcaga 20010  T
Q  685 tgcgccttcttcttcactgatactcccgcccgcctgaatatatcaaa 731  Q
       |||| ||||||||||||||||  | ||| |||||||||||||||    
T  20011 gaggcctccttcttcactgatactttcaccctcctgaatatatcaaa 20057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 466 - 659
Target Start/End: Complemental strand, 47570 - 47377
Alignment:
Q  466 gtcaggacacactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgat 565  Q
    ||||| ||||| ||||| |||||||||| |||| ||||||    |||||||| || | | |||||| |||||||  |  | || |||||| ||||||| |    
T  47570 gtcagaacacattttctcatgtttggccattttacttgacgcaacttttaggtttatttgtcctaccgtaaaagtctcaatccctaatcccacaagtggt 47471  T
Q  566 agaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
      ||||||| | || ||||||| ||||| |||| ||| ||||||||||||||||||||||| ||||   |||||||| |||||||||| |||||    
T  47470 gaaaccccaatcaagtccacacttgcatttttttctcatactcatttgtacaccataacatttgcatccctaagtgttgatcttctatttagtg 47377  T

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Target: scaffold1768 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 475 - 667
Target Start/End: Complemental strand, 206 - 14
Alignment:
Q  475 cactttcttatgtttggcccttttgcttgacatggcttttagggttgtctatcctacagtaaaagctttgacccttaatcctacaagtgatagaacccca 574  Q
    |||| ||| ||||||||||  ||||||||||   | |||||||| || || ||||||||||||||    ||| |||||||| ||||||| |  |||||||    
T  206 cactgtctcatgtttggccactttgcttgacgcagtttttagggctgcctgtcctacagtaaaaggcccgacacttaatcccacaagtggtgaaacccca 107  T
Q  575 gtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtc 667  Q
    || || || | ||||||||||||||||||||| |||  ||||| ||||||||  ||  | ||  |||| |||| ||||||||||| |||||||    
T  106 gtcaagtctatacatgcatgttttcctcctacccatccgtacatcataacatccgcgggcctgcgtgttgatcatctatctagtgggtcagtc 14  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 102979 - 103075
Alignment:
Q  362 tgaatagaatgcaagcgggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagaca 458  Q
    ||||||||| ||||||||| ||||||||| ||||||||   ||||||| || ||||| ||||| ||||||||| || ||| |||| |||||||||||    
T  102979 tgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagaca 103075  T

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Target: scaffold0470 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 7493 - 7575
Alignment:
Q  379 ggtaacaagttgtgccgctaggtatttttgggtgacaaaatcaatcatcgtaaacataatatttatgggcctaggagacatga 461  Q
    ||||||||| ||||||| ||| | ||||||| |||||||| ||||  |||||||||||| ||| |||| |||| |||||||||    
T  7493 ggtaacaagctgtgccgttagatctttttggatgacaaaaccaatactcgtaaacataacattcatggacctatgagacatga 7575  T

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Target: scaffold0148 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 706
Target Start/End: Original strand, 33453 - 33561
Alignment:
Q  592 atgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtgcgtcagtcgggtcaagaagttcacatgcgcct 691  Q
    ||||||||||||||| |||  ||||||||||||||  ||| | || ||||| |||||||||||||||     || |  ||||||||||||||| ||||||    
T  33453 atgttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttctatctagt-----aggc-agtcaagaagttcacaggcgcct 33546  T
Q  692 tcttcttcactgata 706  Q
     ||||||||||||||    
T  33547 ccttcttcactgata 33561  T

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Target: scaffold0224 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 659
Target Start/End: Complemental strand, 18270 - 18203
Alignment:
Q  592 atgttttcctcctactcatttgtacaccataacatatgcaagtctaagtgtcgatcttctatctagtg 659  Q
    ||||||||||||||| ||| |||||||| |||||| |||||| |||| ||| |||||| ||| |||||    
T  18270 atgttttcctcctacccatctgtacaccttaacatctgcaagcctaaatgttgatcttttatttagtg 18203  T

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