View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_10 (Length: 486)
Name: NF3728_low_10
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 9721542 - 9721261
Alignment:
| Q |
11 |
cagagagaacaggaacaaaaactccaccacttcatatcacagcatcaataccatttggttgggaagaagagccaggaaaaccaagaccatgtactgatct |
110 |
Q |
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| T |
9721542 |
cagagagatcaggaacaaaaactccaccacttcatatcacagcgtcaataccatttggttgggaagaagagccaggaaaaccaagaccatgtactgatct |
9721443 |
T |
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| Q |
111 |
tgtaacattctcaaatccaacactagtcaagtgtttggaacttcctccaaggttgttcattgatacaaaagttccatcacctacaacagttttggatgga |
210 |
Q |
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| T |
9721442 |
tgtaacattctcaaatccaacactagtcaagtgtttggaacttcctccaaggttgttcattgatacaaaagttccatcacctacaacagttttggatgga |
9721343 |
T |
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| Q |
211 |
ccctacaaaatagagtgttgtgattcctttggttatgaaagtgggaaacatgggagtttgattcttaaggaagaaattaggg |
292 |
Q |
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| T |
9721342 |
ccctacaaaaaagagtgttgtgattcctttggttatgaaagtgggaaacttgggagtttgattcttaaggaagaaattaggg |
9721261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 363 - 468
Target Start/End: Complemental strand, 9721190 - 9721088
Alignment:
| Q |
363 |
atcttctgttgataaggataatgataatgtggttgttggtggcattataggtagtgacaagaataatgtgaagatgaggaagaagataaaacattatggt |
462 |
Q |
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| T |
9721190 |
atcttctgttgataaggataatgataatgtggttgttggtggcattataggtagtgacaag---aatgtgaagatgaggaagaagataaaacattatggt |
9721094 |
T |
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| Q |
463 |
agcttt |
468 |
Q |
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| T |
9721093 |
agcttt |
9721088 |
T |
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