View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_12 (Length: 453)

Name: NF3728_low_12
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_12
NF3728_low_12
[»] chr8 (8 HSPs)
chr8 (60-432)||(18529642-18530016)
chr8 (336-426)||(18535087-18535177)
chr8 (208-244)||(30213932-30213968)
chr8 (201-311)||(27137841-27137951)
chr8 (130-175)||(27137733-27137778)
chr8 (130-176)||(20049786-20049832)
chr8 (131-167)||(14547738-14547774)
chr8 (128-160)||(15598279-15598311)
[»] chr1 (3 HSPs)
chr1 (208-318)||(26858607-26858717)
chr1 (112-150)||(40817736-40817774)
chr1 (215-244)||(21721490-21721519)
[»] chr4 (11 HSPs)
chr4 (208-321)||(14116424-14116537)
chr4 (278-361)||(21546118-21546201)
chr4 (208-293)||(13929430-13929515)
chr4 (215-324)||(11442085-11442194)
chr4 (215-324)||(11551501-11551610)
chr4 (129-174)||(11011616-11011661)
chr4 (113-168)||(17133383-17133436)
chr4 (78-134)||(18949797-18949853)
chr4 (312-362)||(39938287-39938337)
chr4 (278-346)||(6115863-6115930)
chr4 (208-319)||(8189728-8189837)
[»] chr2 (6 HSPs)
chr2 (208-323)||(25907951-25908066)
chr2 (310-390)||(21539030-21539110)
chr2 (208-324)||(19693385-19693501)
chr2 (211-323)||(12845697-12845809)
chr2 (215-254)||(13892217-13892256)
chr2 (215-254)||(14032342-14032381)
[»] chr3 (5 HSPs)
chr3 (202-324)||(9829498-9829618)
chr3 (131-176)||(27685549-27685594)
chr3 (215-244)||(12759109-12759138)
chr3 (112-160)||(17769651-17769699)
chr3 (112-160)||(19070952-19071000)
[»] chr5 (3 HSPs)
chr5 (208-324)||(19761265-19761381)
chr5 (278-427)||(25954804-25954952)
chr5 (262-324)||(17246011-17246073)
[»] scaffold0425 (1 HSPs)
scaffold0425 (261-324)||(2544-2607)
[»] chr7 (8 HSPs)
chr7 (315-373)||(4514405-4514463)
chr7 (311-392)||(23182846-23182928)
chr7 (208-324)||(7145248-7145364)
chr7 (208-244)||(26454143-26454179)
chr7 (130-176)||(12223081-12223126)
chr7 (216-244)||(4031835-4031863)
chr7 (77-161)||(4514645-4514729)
chr7 (306-362)||(21633734-21633790)
[»] scaffold0669 (1 HSPs)
scaffold0669 (202-346)||(4393-4534)
[»] chr6 (2 HSPs)
chr6 (108-175)||(4098234-4098297)
chr6 (107-160)||(12870654-12870706)
[»] scaffold0008 (2 HSPs)
scaffold0008 (113-176)||(9838-9900)
scaffold0008 (113-176)||(20231-20293)
[»] scaffold1339 (1 HSPs)
scaffold1339 (128-160)||(1723-1755)
[»] scaffold0105 (1 HSPs)
scaffold0105 (208-319)||(16303-16412)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 60 - 432
Target Start/End: Original strand, 18529642 - 18530016
Alignment:
Q  60 aacacaacattttatcct-gttcaccccacaatctgaggttacatccggttcctttgcactttcaatgaattttttaactataatcacacaagattacaa 158  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  18529642 aacacaacattttatcctagttcaccccacaatcagaggttacatccagttcctttgcactttcaatgaattttttcactataatcacacaagattataa 18529741  T
Q  159 tttgctcaaatacacaagattataatttgctcaaatacacagtaaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataac 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  18529742 tttgctcaaatacacaagattataatttgctcaaatacacagtaaaagggattgtgtttacacttgatatacagttagaggtgtaactaacttaaagaac 18529841  T
Q  259 aaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttg 358  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18529842 aaatgacttctaaacacttgagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttg 18529941  T
Q  359 taaattgttcgaagtgttgtgtgttcttcaaactactaaagtccttaaacatgagagaaataa-tagagcaggta 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18529942 taaattgttcgaagtgttgtgtgttcttcaaactactaaagtccttaaacatgagagaaataattagagcaggta 18530016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 18535087 - 18535177
Alignment:
Q  336 atttgacagagattttgctcttgtaaattgttcgaagtgttgtgtgttcttcaaactactaaagtccttaaacatgagagaaataatagag 426  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||   ||  ||||||  ||||||||||||||||    
T  18535087 atttgatagagatttggctcttgtaaattgttcgaagtgttgtatgttcttcaaactactcgggttgttaaaccggagagaaataatagag 18535177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 30213932 - 30213968
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaa 244  Q
    |||||||||||||||||||||||||||||||||||||    
T  30213932 gattgtgtttacacttgatatacaattagaggtgtaa 30213968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 27137841 - 27137951
Alignment:
Q  201 taaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtt 300  Q
    |||||| |||||| |||||| |||||||||||  | ||||||||  || |||||    |||||||||||||| ||| |||| ||||||||||| |||| |    
T  27137841 taaaagagattgtttttacatttgatatacaaccaaaggtgtaagaaagttaaagtgaaaatgacttctaaatacttaagaaattctaagattgaaagct 27137940  T
Q  301 tgtacgaattt 311  Q
    |||| ||||||    
T  27137941 tgtaagaattt 27137951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 27137733 - 27137778
Alignment:
Q  130 tttttaactataatcacacaagattacaatttgctcaaatacacaa 175  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||    
T  27137733 tttttcactatagtcacacaagattacaatttgctcaaacacacaa 27137778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 20049832 - 20049786
Alignment:
Q  130 tttttaactataatcacacaagattacaatttgctcaaatacacaag 176  Q
    ||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  20049832 tttttcactataatctcacaatattacaatttgctcaaacacacaag 20049786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 14547738 - 14547774
Alignment:
Q  131 ttttaactataatcacacaagattacaatttgctcaa 167  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  14547738 tttttactataatcacacaagattacaattcgctcaa 14547774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 15598279 - 15598311
Alignment:
Q  128 attttttaactataatcacacaagattacaatt 160  Q
    ||||||| |||||||||||||||||||||||||    
T  15598279 atttttttactataatcacacaagattacaatt 15598311  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 26858717 - 26858607
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    |||||| ||||||||||||||||||||||| || ||| |||||||||   ||| ||||||||||||||| |||| ||||||||||| |||||||||| ||    
T  26858717 gattgtttttacacttgatatacaattagaagtataattaacttaaagtgcaagtgacttctaaacacttaagaaattctaagattaaaagtttgtaaga 26858618  T
Q  308 atttttctaag 318  Q
    |||||||||||    
T  26858617 atttttctaag 26858607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 40817774 - 40817736
Alignment:
Q  112 tttgcactttcaatgaattttttaactataatcacacaa 150  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  40817774 tttgcacttccaatgaattttttcactataatcacacaa 40817736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 21721519 - 21721490
Alignment:
Q  215 tttacacttgatatacaattagaggtgtaa 244  Q
    ||||||||||||||||||||||||||||||    
T  21721519 tttacacttgatatacaattagaggtgtaa 21721490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 321
Target Start/End: Original strand, 14116424 - 14116537
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    ||||||| |||||||||||||||||| ||||||||||  ||||||||  | || ||||||||||||||| || | ||||||||||| |||||||||| ||    
T  14116424 gattgtgcttacacttgatatacaatcagaggtgtaataaacttaaagtataagtgacttctaaacacttaaaaaattctaagattgaaagtttgtaaga 14116523  T
Q  308 atttttctaagtgt 321  Q
    |||||| |||||||    
T  14116524 atttttttaagtgt 14116537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 21546201 - 21546118
Alignment:
Q  278 aagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaa 361  Q
    |||| ||||||||||   ||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||| || |||||||    
T  21546201 aagaaattctaagatactaagtttgtaagaatttttttaagtgtttgaatacttttgaatttgacagagttttagcacttgtaa 21546118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 13929515 - 13929430
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatt 293  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||| |  ||  ||||||| |||||| |||| |||||||||||    
T  13929515 gattgtgtttatacttgatatacaatcagaggtgtaagtaacttaaagagaaagcgacttctgaacacttaagaaattctaagatt 13929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 11442085 - 11442194
Alignment:
Q  215 tttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttc 314  Q
    |||| |||||||||||||| |||||| |||  ||| ||||   ||| |||||||| |||||| || | |||||||| || |||||||||| |||||||||    
T  11442085 tttaaacttgatatacaatcagaggtataaaaaacctaaagtgcaagtgacttctgaacacttaaaaaattctaaggttcaaagtttgtaagaatttttc 11442184  T
Q  315 taagtgtttg 324  Q
    ||||| ||||    
T  11442185 taagtatttg 11442194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 11551610 - 11551501
Alignment:
Q  215 tttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttc 314  Q
    |||| |||||||||||||| |||||| |||  ||| ||||   ||| |||||||| |||||| || | |||||||| || |||||||||| |||||||||    
T  11551610 tttaaacttgatatacaatcagaggtataaaaaacctaaagtgcaagtgacttctgaacacttaaaaaattctaaggttcaaagtttgtaagaatttttc 11551511  T
Q  315 taagtgtttg 324  Q
    ||||| ||||    
T  11551510 taagtatttg 11551501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 11011661 - 11011616
Alignment:
Q  129 ttttttaactataatcacacaagattacaatttgctcaaatacaca 174  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||    
T  11011661 tttttttactataatcacacaagattacaattttctcaaacacaca 11011616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 17133383 - 17133436
Alignment:
Q  113 ttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaa 168  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||| ||||||    
T  17133383 ttgcactttcaatgaattttc--actgtaatcacacaagattacaatttactcaaa 17133436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 18949797 - 18949853
Alignment:
Q  78 gttcaccccacaatctgaggttacatccggttcctttgcactttcaatgaatttttt 134  Q
    |||||||||| || | ||| |||| ||| ||||||||||||||||||||||||||||    
T  18949797 gttcaccccataacccgagattacttccagttcctttgcactttcaatgaatttttt 18949853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 39938287 - 39938337
Alignment:
Q  312 ttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaa 362  Q
    |||||||||||||||   |||||||||||||| |||||| |||||||||||    
T  39938287 ttctaagtgtttgaatgattttgaatttgacatagatttggctcttgtaaa 39938337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 6115863 - 6115930
Alignment:
Q  278 aagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagag 346  Q
    |||| |||||||||| ||||||| ||| ||||||| |||||||||||    ||||||||||||||||||    
T  6115863 aagaaattctaagatctaaagttggtaagaatttt-ctaagtgtttgtgcgcttttgaatttgacagag 6115930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 8189728 - 8189837
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    ||||||||| ||||||||||  |||| | | ||||||  ||||||||   ||| |||||| | |||||| |||| ||| | |||||||||||||| | ||    
T  8189728 gattgtgttgacacttgata--caatcatatgtgtaagaaacttaaagtgcaagtgacttatgaacacttaagaaattatgagatttaaagtttggaaga 8189825  T
Q  308 atttttctaagt 319  Q
    ||||||||||||    
T  8189826 atttttctaagt 8189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 25908066 - 25907951
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||     || ||||||| ||||||| |||| ||||||||||| ||||||| || ||    
T  25908066 gattgtgtttacacttgatatagaataagaggtgtaagtaacttaatgtgtaagtgacttccaaacacttaagaaattctaagattaaaagtttttaaga 25907967  T
Q  308 atttttctaagtgttt 323  Q
    |||||| |||||||||    
T  25907966 atttttgtaagtgttt 25907951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 21539110 - 21539030
Alignment:
Q  310 ttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaattgttcgaagtgttgtgtgttcttcaaa 390  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||  | |||||||||    
T  21539110 ttttctaagtgttttaagacttttgaatttgacagaggtttggctattgtaaattgttcaaagtgttgcatattcttcaaa 21539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 19693501 - 19693385
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    ||||||||||||| |||||||||||| ||||||||||  ||||||||   ||| |||||||  |  | | |||| ||||||||||| ||||||||||| |    
T  19693501 gattgtgtttacatttgatatacaatcagaggtgtaaaaaacttaaagtgcaagtgacttcatattaattaagaaattctaagattgaaagtttgtacaa 19693402  T
Q  308 atttttctaagtgtttg 324  Q
    |||| ||||||| ||||    
T  19693401 atttctctaagtatttg 19693385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 12845809 - 12845697
Alignment:
Q  211 tgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatt 310  Q
    |||||||||| |||||||||||| | ||||||||  |  || ||   ||| |||||| | |||||| |||| ||||||||||| |||  ||||| |||||    
T  12845809 tgtgtttacagttgatatacaatcaaaggtgtaaacatgttcaagtgcaagtgacttatgaacacttaagaaattctaagattgaaaacttgtaagaatt 12845710  T
Q  311 tttctaagtgttt 323  Q
    |||||||||||||    
T  12845709 tttctaagtgttt 12845697  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 13892217 - 13892256
Alignment:
Q  215 tttacacttgatatacaattagaggtgtaactaacttaaa 254  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  13892217 tttacacttgatatacaattagaggtgtaagaaacttaaa 13892256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 14032342 - 14032381
Alignment:
Q  215 tttacacttgatatacaattagaggtgtaactaacttaaa 254  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  14032342 tttacacttgatatacaattagaggtgtaagaaacttaaa 14032381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 9829618 - 9829498
Alignment:
Q  202 aaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagttt 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||  || |||| |    |||||||||| || ||| |||| |||||||||| | || |||    
T  9829618 aaaagagattgtgtttacacttgatatacaattagaggtgtaataaatttaagt--tcaatgacttctgaatacttaagaaattctaagatatgaaattt 9829521  T
Q  302 gtacgaatttttctaagtgtttg 324  Q
    ||| |||||| ||||||||||||    
T  9829520 gtaagaatttctctaagtgtttg 9829498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 27685549 - 27685594
Alignment:
Q  131 ttttaactataatcacacaagattacaatttgctcaaatacacaag 176  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||    
T  27685549 ttttcactataatcacacaggattacaatttgctcaaacacacaag 27685594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 12759109 - 12759138
Alignment:
Q  215 tttacacttgatatacaattagaggtgtaa 244  Q
    ||||||||||||||||||||||||||||||    
T  12759109 tttacacttgatatacaattagaggtgtaa 12759138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 17769699 - 17769651
Alignment:
Q  112 tttgcactttcaatgaattttttaactataatcacacaagattacaatt 160  Q
    ||||||||| ||| ||  ||||| |||||||||||||||||||||||||    
T  17769699 tttgcacttccaaggagatttttcactataatcacacaagattacaatt 17769651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 19071000 - 19070952
Alignment:
Q  112 tttgcactttcaatgaattttttaactataatcacacaagattacaatt 160  Q
    ||||||||| ||| ||  ||||| |||||||||||||||||||||||||    
T  19071000 tttgcacttccaaggagatttttcactataatcacacaagattacaatt 19070952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 19761265 - 19761381
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    |||||||||||||||||||||||||| ||| |||||| ||||| |||   ||| ||||||||||| ||| |||| ||| ||||||| || ||||||| ||    
T  19761265 gattgtgtttacacttgatatacaatcagaagtgtaattaactcaaagttcaagtgacttctaaagacttaagaaattttaagattgaatgtttgtaaga 19761364  T
Q  308 atttttctaagtgtttg 324  Q
      |||| ||||||||||    
T  19761365 tattttataagtgtttg 19761381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 25954952 - 25954804
Alignment:
Q  278 aagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaattgttcgaagtgttg 377  Q
    |||| |||||||||| ||||||||||| ||| |||||||||||||||   |||||| |||||||||||| |||  | |||||||| | |  ||||| |      
T  25954952 aagaaattctaagatataaagtttgtaagaa-ttttctaagtgtttgtgcacttttaaatttgacagagttttgacacttgtaaaatatgtgaagtctca 25954854  T
Q  378 tgtgttcttcaaactactaaagtccttaaacatgagagaaataatagagc 427  Q
    |  |||||||||||| || | ||||||| | | ||||||||||| |||||    
T  25954853 taagttcttcaaacttctcatgtccttatataggagagaaataagagagc 25954804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 17246011 - 17246073
Alignment:
Q  262 tgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttctaagtgtttg 324  Q
    |||||| | |||||| |||| |||||| |||| ||||||| || |||||||||||||||||||    
T  17246011 tgacttatgaacacttaagaaattctatgattgaaagtttataagaatttttctaagtgtttg 17246073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 2544 - 2607
Alignment:
Q  261 atgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttctaagtgtttg 324  Q
    ||||||||| ||||||  ||||||||||||||| |||||||||| |||||| ||||||||||||    
T  2544 atgacttctgaacacttgagatattctaagattgaaagtttgtaagaatttctctaagtgtttg 2607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 4514463 - 4514405
Alignment:
Q  315 taagtgtttgaagacttttgaatttgacagagattttgctcttgtaaattgttcgaagt 373  Q
    ||||||||||||| |||||||||||||||||| ||  | ||||||||||||||||||||    
T  4514463 taagtgtttgaaggcttttgaatttgacagaggttggggtcttgtaaattgttcgaagt 4514405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 23182846 - 23182928
Alignment:
Q  311 tttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaa-ttgttcgaagtgttgtgtgttcttcaaact 392  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||| |||| || ||| ||||||| ||| |||||||||||    
T  23182846 tttctaagtgtttgaaggcttttgaatttgacagaggtttgactcttataaattttttcaaagtgttatgtattcttcaaact 23182928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 7145364 - 7145248
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    |||| |||||||||||||| |||||| | |||||||| |||||||||   ||  | | || | ||||||||||| ||||||||||| ||| | |||| |     
T  7145364 gattatgtttacacttgatttacaatcataggtgtaattaacttaaagtgcatgtaattttttaacactaaagaaattctaagattgaaactctgtaagc 7145265  T
Q  308 atttttctaagtgtttg 324  Q
    |||||||||||||||||    
T  7145264 atttttctaagtgtttg 7145248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 26454179 - 26454143
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaa 244  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26454179 gattgtgtttacacttgatatacaatcagaggtgtaa 26454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 12223126 - 12223081
Alignment:
Q  130 tttttaactataatcacacaagattacaatttgctcaaatacacaag 176  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  12223126 tttttcactataatcacacaagattacaa-ttgctcaaacacacaag 12223081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 4031863 - 4031835
Alignment:
Q  216 ttacacttgatatacaattagaggtgtaa 244  Q
    |||||||||||||||||||||||||||||    
T  4031863 ttacacttgatatacaattagaggtgtaa 4031835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 4514729 - 4514645
Alignment:
Q  77 tgttcaccccacaatctgaggttacatccggttcctttgcactttcaatgaattttttaactataatcacacaagattacaattt 161  Q
    |||||||||||||||| |||||| ||||| ||  | ||| |||| |||   ||||||  ||||||||||||||||||| ||||||    
T  4514729 tgttcaccccacaatccgaggttgcatccagtctccttgaacttccaagagatttttccactataatcacacaagattgcaattt 4514645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 21633790 - 21633734
Alignment:
Q  306 gaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaa 362  Q
    ||||||||||| ||||| |||  |||||||||||||||||| |||  ||||||||||    
T  21633790 gaatttttctaggtgttcgaatgcttttgaatttgacagagttttgactcttgtaaa 21633734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 346
Target Start/End: Original strand, 4393 - 4534
Alignment:
Q  202 aaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagttt 301  Q
    ||||| |||||  |||||| |||||||||||| | | ||| |  ||||||||| ||||| ||||||   |||| | |||| |||||||||||  ||||||    
T  4393 aaaagagattgattttacagttgatatacaatcaaatgtgcatttaacttaaagaacaagtgactt---aacaattaagaaattctaagattgtaagttt 4489  T
Q  302 gtacgaatttttctaagtgtttgaagacttttgaatttgacagag 346  Q
    |||| ||| ||||||||||||||   |||||| ||||||| ||||    
T  4490 gtactaatatttctaagtgtttgtgcactttttaatttgagagag 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 4098297 - 4098234
Alignment:
Q  108 ttcctttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaatacacaa 175  Q
    |||||||||||||||||||||   ||| |||| |||||||||||||||||| ||||||||| ||||||    
T  4098297 ttcctttgcactttcaatgaa---tttcactacaatcacacaagattacaa-ttgctcaaagacacaa 4098234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 12870706 - 12870654
Alignment:
Q  107 gttcctttgcactttcaatgaattttttaactataatcacacaagattacaatt 160  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||||||||||    
T  12870706 gttcctttgcactttcaagagatttttta-ctataatcacacaagattacaatt 12870654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 9900 - 9838
Alignment:
Q  113 ttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaatacacaag 176  Q
    |||||||| ||||| |||||| | |||||||||||||| |||||| |||||||||| |||||||    
T  9900 ttgcacttccaatggatttttca-ctataatcacacaatattacagtttgctcaaacacacaag 9838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 20293 - 20231
Alignment:
Q  113 ttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaatacacaag 176  Q
    |||||||  |||||||||||| | |||||||||||||| |||||| |||||||||| |||||||    
T  20293 ttgcactaccaatgaatttttca-ctataatcacacaatattacagtttgctcaaacacacaag 20231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 1723 - 1755
Alignment:
Q  128 attttttaactataatcacacaagattacaatt 160  Q
    ||||||| |||||||||||||||||||||||||    
T  1723 attttttcactataatcacacaagattacaatt 1755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 16303 - 16412
Alignment:
Q  208 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 307  Q
    ||||||||| ||||||||||  |||| | | ||||||  ||||||||   ||| |||||| | |||||| |||| ||| | |||||||||||||| | ||    
T  16303 gattgtgttgacacttgata--caatcatatgtgtaagaaacttaaagtgcaagtgacttatgaacacttaagaaattatgagatttaaagtttggaaga 16400  T
Q  308 atttttctaagt 319  Q
    ||||||||||||    
T  16401 atttttctaagt 16412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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