View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3728_low_13 (Length: 450)
Name: NF3728_low_13
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_13 |
 | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 35 - 440
Target Start/End: Original strand, 1964879 - 1965284
Alignment:
| Q |
35 |
tgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1964879 |
tgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaa |
1964978 |
T |
|
| Q |
135 |
caaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatcttt |
234 |
Q |
| |
|
||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1964979 |
caaattgttcagctggctctggggttagaattgagtaatcagaaattcctatgggttgtgtgagcaccaagtagtagttcatctagtgcagcatatcttt |
1965078 |
T |
|
| Q |
235 |
cagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagat |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965079 |
cagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagat |
1965178 |
T |
|
| Q |
335 |
tcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatgg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1965179 |
tcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcacatgg |
1965278 |
T |
|
| Q |
435 |
cctatg |
440 |
Q |
| |
|
|||||| |
|
|
| T |
1965279 |
cctatg |
1965284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 2011834 - 2011410
Alignment:
| Q |
16 |
cagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011834 |
cagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtgg |
2011735 |
T |
|
| Q |
116 |
tggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011734 |
tggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttca |
2011635 |
T |
|
| Q |
216 |
tctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcatta |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
2011634 |
tctaatgcagcatatctttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagagaaccaaagaggaaggttttgtcatta |
2011535 |
T |
|
| Q |
316 |
catcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatgg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
2011534 |
catcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatgg |
2011435 |
T |
|
| Q |
416 |
agtgccactaatcgcatggcctatg |
440 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
2011434 |
ggtgccactaatcacatggcctatg |
2011410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 43 - 437
Target Start/End: Complemental strand, 2004812 - 2004418
Alignment:
| Q |
43 |
atggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgt |
142 |
Q |
| |
|
|||| ||||| ||||| ||||||| || ||||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
2004812 |
atgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgt |
2004713 |
T |
|
| Q |
143 |
tgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
2004712 |
tgagctggctttgggtttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaa |
2004613 |
T |
|
| Q |
243 |
aatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatcc |
342 |
Q |
| |
|
||||| | |||| ||| | | ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
2004612 |
aatgatgctgacacttggcagtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtgccgcagattcaaatcc |
2004513 |
T |
|
| Q |
343 |
ttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
437 |
Q |
| |
|
| ||||| | ||| | || |||||||||| ||| ||||| ||||| |||||||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2004512 |
taagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataacatggcct |
2004418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 437
Target Start/End: Original strand, 1968812 - 1969223
Alignment:
| Q |
32 |
tgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacac |
131 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||| || ||||| || |||| |||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
1968812 |
tgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacac |
1968911 |
T |
|
| Q |
132 |
gaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatc |
231 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| | |||||| |||||| |||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
1968912 |
gaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatc |
1969011 |
T |
|
| Q |
232 |
tttcagcacaaaatgacggtgaccctttgaaatttttacc------atctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggc |
325 |
Q |
| |
|
|||||||| ||||||| |||| ||||| | |||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
1969012 |
tttcagcagaaaatgatattgacactttgcagtttttaccatctggatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggc |
1969111 |
T |
|
| Q |
326 |
acctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccacta |
425 |
Q |
| |
|
|| |||||||||||||| ||||| | |||||||| || ||||||| ||| ||||| ||||| ||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
1969112 |
gccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccacta |
1969211 |
T |
|
| Q |
426 |
atcgcatggcct |
437 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1969212 |
atcacatggcct |
1969223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 27 - 421
Target Start/End: Complemental strand, 2008208 - 2007814
Alignment:
| Q |
27 |
tctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacacttt |
126 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| | ||||| || ||||| ||| ||||||| ||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
2008208 |
tctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggttttgtatgtatcttttgggagtggaggtacacttt |
2008109 |
T |
|
| Q |
127 |
cacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagc |
226 |
Q |
| |
|
|||| || |||||||| ||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
2008108 |
cacaggagcaaattgtggagctagctttgggtttggaattgagtaatacaaaattcttgtgggttttgcgagcaccgagtagcagttcatctagtgcagg |
2008009 |
T |
|
| Q |
227 |
atatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggca |
326 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2008008 |
atatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcg |
2007909 |
T |
|
| Q |
327 |
cctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
421 |
Q |
| |
|
|| |||||||||||||| ||||| | ||| |||| |||||||||| || ||||| ||||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
2007908 |
ccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgcc |
2007814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 32 - 437
Target Start/End: Complemental strand, 2018600 - 2018201
Alignment:
| Q |
32 |
tgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacac |
131 |
Q |
| |
|
|||||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| || |||||||| |||||||| || |
|
|
| T |
2018600 |
tgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaa |
2018501 |
T |
|
| Q |
132 |
gaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatc |
231 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||| || || | | ||| ||||||| |
|
|
| T |
2018500 |
gaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaata---cagccaatgctgcatatc |
2018404 |
T |
|
| Q |
232 |
tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctca |
331 |
Q |
| |
|
||||||| | ||| | ||||||||| |||||||||| || ||||| |||||||||| ||||| |||| | || ||| ||||||||||||| || |
|
|
| T |
2018403 |
tttcagc---atctgatgttgaccctttacaatttttaccttcagggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccaca |
2018307 |
T |
|
| Q |
332 |
gattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgca |
431 |
Q |
| |
|
||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| |||||||||||| || |
|
|
| T |
2018306 |
gattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcaca |
2018207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 124 - 437
Target Start/End: Original strand, 2436704 - 2437023
Alignment:
| Q |
124 |
tttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgc |
223 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2436704 |
tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaaatagtagttcatctagtgc |
2436803 |
T |
|
| Q |
224 |
agcata----tc--tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattaca |
317 |
Q |
| |
|
|||||| || |||||||||||||||| | |||||||||| |||||||||||| |||||| | |||||||| ||||| |||| | || ||| || |
|
|
| T |
2436804 |
agcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattcca |
2436903 |
T |
|
| Q |
318 |
tcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggag |
417 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| || ||| |||| || ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |
|
|
| T |
2436904 |
tcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtg |
2437003 |
T |
|
| Q |
418 |
tgccactaatcgcatggcct |
437 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
2437004 |
tgccactaatcacatggcct |
2437023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 27 - 437
Target Start/End: Original strand, 1963207 - 1963611
Alignment:
| Q |
27 |
tctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacacttt |
126 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
1963207 |
tctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgtatgtttcttttggtagtggtggcacacttt |
1963306 |
T |
|
| Q |
127 |
cacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagc |
226 |
Q |
| |
|
| || |||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||||| || | | ||| || |
|
|
| T |
1963307 |
cgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatgggttgtaagagctccaagtagta---cagcaaatgctgc |
1963403 |
T |
|
| Q |
227 |
atatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggca |
326 |
Q |
| |
|
|||||||||||| | ||| | ||| ||||| | ||||||||||||||||||||||||||||| ||||| |||| | || || ||||||||||| |
|
|
| T |
1963404 |
atatctttcagc---atctgatgttgatcctttacagtttttaccatctgggtttttggagagaaccaaggaacaagggatggttgttccatcatgggca |
1963500 |
T |
|
| Q |
327 |
cctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaa |
426 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||||| ||||| ||| ||| ||||||||||| ||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
1963501 |
ccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaa |
1963600 |
T |
|
| Q |
427 |
tcgcatggcct |
437 |
Q |
| |
|
|| | |||||| |
|
|
| T |
1963601 |
tcacttggcct |
1963611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 27 - 437
Target Start/End: Complemental strand, 2015222 - 2014818
Alignment:
| Q |
27 |
tctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacacttt |
126 |
Q |
| |
|
|||| ||||||||||||| || || |||||| ||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
2015222 |
tctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgtatgtgtctttcgggagtggtggaacacttt |
2015123 |
T |
|
| Q |
127 |
cacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagc |
226 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||| || || | | ||| || |
|
|
| T |
2015122 |
cgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaata---cagccaatgctgc |
2015026 |
T |
|
| Q |
227 |
atatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggca |
326 |
Q |
| |
|
|||||||||||| | ||| | ||||||||| |||||||||| || ||||| ||||||||||| ||||| |||| | || ||| ||||||||||| |
|
|
| T |
2015025 |
atatctttcagc---atctgatgttgaccctttacaatttttaccttcagggttcttggagagaacaaaggaacaagggatggttattccatcatgggca |
2014929 |
T |
|
| Q |
327 |
cctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaa |
426 |
Q |
| |
|
|| ||||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| |||| ||||| |||||| ||||||| |||||||||| |
|
|
| T |
2014928 |
ccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaa |
2014829 |
T |
|
| Q |
427 |
tcgcatggcct |
437 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2014828 |
tcacatggcct |
2014818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 10201945 - 10201869
Alignment:
| Q |
345 |
agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
421 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
10201945 |
agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10201869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 10209018 - 10208942
Alignment:
| Q |
345 |
agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
421 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
10209018 |
agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10208942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 41 - 437
Target Start/End: Original strand, 5902394 - 5902787
Alignment:
| Q |
41 |
taatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaatt |
140 |
Q |
| |
|
||||||| ||||||||||| |||||||| | ||||||||| ||||||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||| |
|
|
| T |
5902394 |
taatggtatggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaatt |
5902493 |
T |
|
| Q |
141 |
gttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcac |
240 |
Q |
| |
|
| |||| ||||| | |||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||| | |||| ||||||||||||||| |
|
|
| T |
5902494 |
gatgagttggctattggtttggaattgagtaatcataaattcttatgggttgtaagagcacca---agtagttcagccagtggtgcatatctttcagcag |
5902590 |
T |
|
| Q |
241 |
aaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaat |
340 |
Q |
| |
|
||||||| | ||| | |||| | ||||||||| ||||||| ||||||||||| |||||| |||| | || ||| |||||||||||||||||||| ||| |
|
|
| T |
5902591 |
aaaatgatgttgatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaac |
5902690 |
T |
|
| Q |
341 |
ccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
437 |
Q |
| |
|
|||||||| || ||| |||| || ||||||||||||||||| ||||| |||| |||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
5902691 |
acttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcct |
5902787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 42 - 437
Target Start/End: Original strand, 5905879 - 5906271
Alignment:
| Q |
42 |
aatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattg |
141 |
Q |
| |
|
|||||| |||||||| || |||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||| |||||||||| ||||||| || |
|
|
| T |
5905879 |
aatggtatggagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactg |
5905978 |
T |
|
| Q |
142 |
ttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcaca |
241 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||| | ||| ||||||||||||||||| |
|
|
| T |
5905979 |
atgagctagctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagt---tcagcatgtggtgcatatctttcagcaca |
5906075 |
T |
|
| Q |
242 |
aaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatc |
341 |
Q |
| |
|
||| || | ||| | || | | |||||||||||||||| ||||||||||| |||||| |||| | || ||| |||||||||||||||||||| ||||| |
|
|
| T |
5906076 |
aaacgatgttgatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatc |
5906175 |
T |
|
| Q |
342 |
cttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
437 |
Q |
| |
|
|||||||| | ||| |||| || ||||||||||| |||||||||| |||| |||||| || | | ||||||| |||||||||||| |||||||| |
|
|
| T |
5906176 |
cttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcct |
5906271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 436
Target Start/End: Complemental strand, 845149 - 844977
Alignment:
| Q |
264 |
tttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggag |
363 |
Q |
| |
|
||||||||| ||| |||||||| ||||| || | ||||||||| || || ||| |||||||| || ||| |||| ||| |||||||||||||||| | |
|
|
| T |
845149 |
tttttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtg |
845050 |
T |
|
| Q |
364 |
ggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcc |
436 |
Q |
| |
|
|||| || | ||| ||||||||||| ||||| ||||||||||| || ||||| | ||| |||| |||||||| |
|
|
| T |
845049 |
ggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattccaataatagcatggcc |
844977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 870376 - 870261
Alignment:
| Q |
321 |
tgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgc |
420 |
Q |
| |
|
|||||||| || ||| |||| ||| |||||||||||||||| ||||| || | ||| ||||||||||| ||||| ||||||||||| || ||||| | | |
|
|
| T |
870376 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattc |
870277 |
T |
|
| Q |
421 |
cactaatcgcatggcc |
436 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
870276 |
caataatagcatggcc |
870261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 4299617 - 4299667
Alignment:
| Q |
353 |
ttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaag |
403 |
Q |
| |
|
||||||||| || ||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
4299617 |
ttcaattggtggattcttgactcactgtggatggaactcaaccattgaaag |
4299667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 388
Target Start/End: Complemental strand, 15496 - 15204
Alignment:
| Q |
90 |
gttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
189 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||| || |||||| ||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
15496 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
15397 |
T |
|
| Q |
190 |
ttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagag |
289 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||| |||||| | | |||||| | | ||||||||||||||||| ||||||||||| || |
|
|
| T |
15396 |
ttgtgagagcaccaagtgat---tcagttagtgcagcttatcttgaatctacaaatgaagat---cctttgaaatttttacctatagggtttttggaaag |
15303 |
T |
|
| Q |
290 |
aacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
388 |
Q |
| |
|
||| || || ||||||||| | | |||||||||||||||| || |||| |||| ||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
15302 |
aaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaa |
15204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 388
Target Start/End: Original strand, 57348 - 57640
Alignment:
| Q |
90 |
gttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
189 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||| || |||||| ||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
57348 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
57447 |
T |
|
| Q |
190 |
ttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagag |
289 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||| |||||| | | |||||| | | ||||||||||||||||| ||||||||||| || |
|
|
| T |
57448 |
ttgtgagagcaccaagtgat---tcagttagtgcagcttatcttgaatctacaaatgaagat---cctttgaaatttttacctatagggtttttggaaag |
57541 |
T |
|
| Q |
290 |
aacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
388 |
Q |
| |
|
||| || || ||||||||| | | |||||||||||||||| || |||| |||| ||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
57542 |
aaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaa |
57640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 22055 - 22175
Alignment:
| Q |
86 |
ttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattccta |
185 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| |||||||| || |||||| |||||| ||||| ||||||||||||||| ||| | |||| | |
|
|
| T |
22055 |
ttcagttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaatcaatgagctagcttttggtttggaattgagtggtcaaagattcatt |
22154 |
T |
|
| Q |
186 |
tgggttgtgcgagcaccaagt |
206 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
22155 |
tgggtattgagagcaccaagt |
22175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 1351118 - 1351162
Alignment:
| Q |
360 |
ggagggttcttgagtcactgtggttggaactcaacccttgaaagt |
404 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
1351118 |
ggagggtttttgagtcactgtggttggaattcaacaattgaaagt |
1351162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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