View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3728_low_14 (Length: 447)
Name: NF3728_low_14
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 45341928 - 45341577
Alignment:
| Q |
10 |
ctcgtactggaactttgatgtctttgtcttatttgttggggtttgaggaagaaggtnnnnnnnnnnnnnnnnnn---tacacactcattcatacacctca |
106 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45341928 |
ctcgtactggaacgttgatgtctttgtcgtatttgttggggtttgaggaagaaggtatcgacaacaacaacaacaactacacactcattcatacacctca |
45341829 |
T |
|
| Q |
107 |
tcgtaaacttcttcctcattctggtaatttttactttccttagcttgtttaattctagtaccttttaaacttaatcattacaaatttgtttgtatttatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45341828 |
tcgtaaacttcttcctcattctggtaatttttactttcctt-----gtttaattctagtaccttttaaacttaatcattacaaatttgtttgtatttatt |
45341734 |
T |
|
| Q |
207 |
cattaaatttggaagaatgattatttttgttttctagagatttgtcttttccttgaatctgtgtgttcattttgctgattaagaaatttatttattcaat |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45341733 |
cattaaatttgggagaatgattatttttcttttctagagatttgtctttttcttgaatctgtgtgttcattttgctgattaagaaatttatttattcaat |
45341634 |
T |
|
| Q |
307 |
attcatgagtgtattaatttgttgttatagttcatttctgtgtgacctttcacacat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
45341633 |
attcatgagtgtattaatttgttgttatagttaatttccgtgtgacctttcacacat |
45341577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University