View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_16 (Length: 432)

Name: NF3728_low_16
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_16
NF3728_low_16
[»] chr2 (2 HSPs)
chr2 (18-425)||(4417630-4418037)
chr2 (45-146)||(4420106-4420207)
[»] chr4 (4 HSPs)
chr4 (45-215)||(34648843-34649013)
chr4 (85-194)||(41379108-41379217)
chr4 (105-149)||(19719951-19719995)
chr4 (105-149)||(19840598-19840642)
[»] chr1 (1 HSPs)
chr1 (66-142)||(32986339-32986415)
[»] chr7 (1 HSPs)
chr7 (67-194)||(38809672-38809799)
[»] chr5 (1 HSPs)
chr5 (83-119)||(25986024-25986060)
[»] chr8 (1 HSPs)
chr8 (79-154)||(1008618-1008693)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 4418037 - 4417630
Alignment:
Q  18 catggaagctgcagcaacagtttcagctgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4418037 catggaagctgcagcaacagtttcagctgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttca 4417938  T
Q  118 gctgtttggaatgttccaagccatactctagctccatgacgagccgagtcacgaatctccgcggcatatttcccccaaggacgacgccttactcctctat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4417937 gctgtttggaatgttccaagccatactctagctccatgacgagccgagtcacgaatctccgccgcatatttcccccaaggacgacgccttactcctctat 4417838  T
Q  218 agtgcttcttggcaatagtctttgttggttctaagcaactcaacatggcttgatggtggtggttcctatgtggtacatatgtgttggttaaggcattagc 317  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4417837 agtgcttcttggcaatagtcttcgttggttctaagcaactcaacatggcttgatggtggtggtttctatgtggtacatatgtgttggttaaggcattagc 4417738  T
Q  318 ctcgtttaggatttggtatataaccatgtcttgtgagtcattctcgtttaagggtaattctggttgggattgtgataataaaaccatggctatgtctgtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4417737 ctcgtttaggatttggtatataaccatgtcttgtgagtcattctcgtttaagggtaattctggttgggattgtgataataaaaccatggctatgtctgtt 4417638  T
Q  418 tttctctg 425  Q
    ||||||||    
T  4417637 tttctctg 4417630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 4420106 - 4420207
Alignment:
Q  45 tgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatact 144  Q
    ||||||||||||  | || ||||||||||| ||| | ||||||||| |||||||||| | |||||||| ||||||||| |  ||||| |||||||| |||    
T  4420106 tgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaact 4420205  T
Q  145 ct 146  Q
    ||    
T  4420206 ct 4420207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 34648843 - 34649013
Alignment:
Q  45 tgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatact 144  Q
    ||||||||| | |||||| || | ||| |||||| ||||||||||| |||||||||| || ||||| |||||||||||||| ||||| ||||||||||      
T  34648843 tgggaaattcaacaaagctttagcacccctcattctgaaagcagctttatcataagcaattgcagcctcttcagctgtttgaaatgtaccaagccatatc 34648942  T
Q  145 ctagctccatgacgagccgagtcacgaatctccgcggcatatttcccccaaggacgacgccttactcctct 215  Q
    ||||||||||   |   ||||||||||||||| || |||||||| ||||| || ||||||||||| |||||    
T  34648943 ctagctccattttgcttcgagtcacgaatctctgctgcatattttccccacggtcgacgccttacacctct 34649013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 41379108 - 41379217
Alignment:
Q  85 gcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatactctagctccatgacgagccgagtcacgaatctccgcggcat 184  Q
    ||||||||||||||||||| ||| || || ||||| ||||  |||||||||||||| ||||||||||| |     ||||  |||||||||||||| |||     
T  41379108 gcagctctatcataagccaaagccgcatcctcagcggtttcaaatgttccaagccaaactctagctccgttcttcgccggatcacgaatctccgccgcaa 41379207  T
Q  185 atttccccca 194  Q
    ||||||||||    
T  41379208 atttccccca 41379217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 19719951 - 19719995
Alignment:
Q  105 agcagcttcttcagctgtttggaatgttccaagccatactctagc 149  Q
    |||||||||||| || || | ||||||||||||||||||||||||    
T  19719951 agcagcttcttcggccgtgttgaatgttccaagccatactctagc 19719995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 19840642 - 19840598
Alignment:
Q  105 agcagcttcttcagctgtttggaatgttccaagccatactctagc 149  Q
    |||||||||||| || || | ||||||||||||||||||||||||    
T  19840642 agcagcttcttcggccgtgttgaatgttccaagccatactctagc 19840598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 32986415 - 32986339
Alignment:
Q  66 tgaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccata 142  Q
    |||||||||||| || ||||||||||||||||||||  | |||||||||||||| || | ||| || ||||||||||    
T  32986415 tgaacctctcatattaaaagcagctctatcataagctcttgcagcttcttcagcagtgttgaaagtgccaagccata 32986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 38809799 - 38809672
Alignment:
Q  67 gaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatactctagctccatgacgagccgagt 166  Q
    |||||||||||||  |||||||| | |||||||||  | |||||||| ||||| || |  ||||| |||||||| |||| ||||||||| | |||||| |    
T  38809799 gaacctctcatttcaaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaat 38809700  T
Q  167 cacgaatctccgcggcatatttccccca 194  Q
    | |||||||| || ||| |||| |||||    
T  38809699 ctcgaatctctgctgcacattttcccca 38809672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 25986060 - 25986024
Alignment:
Q  83 aagcagctctatcataagccatagcagcttcttcagc 119  Q
    ||||||||||||||||||||| |||||||||||||||    
T  25986060 aagcagctctatcataagccaaagcagcttcttcagc 25986024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 1008693 - 1008618
Alignment:
Q  79 ttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatactctagctccat 154  Q
    |||||||  |||||||||||||||| | ||||||||||  | |||| | | ||||||||||| |||||||||||||    
T  1008693 ttgaaagtggctctatcataagccaaaccagcttcttcttcagtttcgtacgttccaagccaaactctagctccat 1008618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University