View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_18 (Length: 396)
Name: NF3728_low_18
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 188 - 386
Target Start/End: Complemental strand, 48020104 - 48019906
Alignment:
| Q |
188 |
gaaaactgtaggtggaaaaagctgaaatgattcaaacactgctttttgttgctggaatcaacactctgttgcagacatggcttggaactaggctcccagt |
287 |
Q |
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| T |
48020104 |
gaaaactgtaggtggaaaaagctgaaatgattcaaacactgctttttgttgctggaatcaacactctgttgcagacatggcttggaactaggctcccagt |
48020005 |
T |
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| Q |
288 |
ggttataggagcatcttttgctttcattattccagctatttctgtggcattctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtg |
386 |
Q |
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| T |
48020004 |
ggttataggagcatcttttgctttcattattccagctatttctgtggcattctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtg |
48019906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48020274 - 48020198
Alignment:
| Q |
18 |
cttgtaatgcttggaaccattgtcattgtttccactattcttgttcctttgatgggtggtggcaatgtaatcatcaa |
94 |
Q |
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| T |
48020274 |
cttgtaatgcttggaaccattgtcattgtttccactattcttgttcctttgatgggtggtggcaatgtaatcatcaa |
48020198 |
T |
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