View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_19 (Length: 387)
Name: NF3728_low_19
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 299448 - 299093
Alignment:
| Q |
13 |
atactaaactaaataaacaacatactgataattcaagtgcccatgaaccaaaagtgannnnnnncaaaaactgaaattgccccacagaaaaatctgaagc |
112 |
Q |
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| T |
299448 |
atacaaaactaaataaacaacatactgataattcaagtgcccatgaaccaaaagtgatttttt-caaaaactgaaattgcgccacagaaaaatctgaagc |
299350 |
T |
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| Q |
113 |
tgttgaaaggaaaggggaaaccagttagtaatccatctaaaacatttgtacatgtacctaaattaacccaggcattagtcttcaacaaataaaaatattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
299349 |
tgttgaaaggaaaggggaaaccagttagtaatccatctaaaacatttgtacatgtacctaaattaacccaggcattagtcttcagcagataaaaatattc |
299250 |
T |
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| Q |
213 |
caaacaaaacttcatataaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatg |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
299249 |
caaacaaaacttcatatgaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatg |
299150 |
T |
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| Q |
313 |
gagtagtgtttctttcttcctttcttagattccacttgggcttgcctgatgactgtg |
369 |
Q |
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| T |
299149 |
gagtagtgtttctttcttcctttcttagattccacttgggcttgcctgacgactgtg |
299093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 112 - 366
Target Start/End: Complemental strand, 301514 - 301256
Alignment:
| Q |
112 |
ctgttgaaaggaaaggggaaaccagttagtaatccatctaaaacatttgtacatgtacctaaattaacccaggcattagtcttcaacaa-ataaaaatat |
210 |
Q |
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| T |
301514 |
ctgttgaaaggagatggtaaactagttagtattcaatctaaaacagttgaatatgcacc-aaattaacccaagcattagttttccaaaatataaaaatat |
301416 |
T |
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| Q |
211 |
tccaaacaaaactt-catataaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgcca |
309 |
Q |
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| T |
301415 |
ttcaaacaaaaatttcatataaagaaggataatattgcctctgactccagttctttctccaaggtatagaccaaactggttccatcaattatgagtgcca |
301316 |
T |
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| Q |
310 |
atggagtagtgtttctt---tcttcctttcttagattccacttgggcttgcctgatgact |
366 |
Q |
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| T |
301315 |
atggagtagtgttttttttctcttcttttcctaaattccacttgggcatgcttgatgact |
301256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 27465123 - 27465193
Alignment:
| Q |
244 |
ttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatgga |
314 |
Q |
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| T |
27465123 |
ttacctctgactccaattccttctccaaaatataaaccaaactattcccatcaattatgagtgccaatgga |
27465193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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