View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_20 (Length: 384)

Name: NF3728_low_20
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_20
NF3728_low_20
[»] chr7 (6 HSPs)
chr7 (89-322)||(19638511-19638743)
chr7 (112-322)||(38758171-38758381)
chr7 (116-245)||(30045787-30045917)
chr7 (117-216)||(38756655-38756754)
chr7 (116-207)||(37556500-37556592)
chr7 (278-322)||(38756825-38756869)
[»] chr5 (2 HSPs)
chr5 (116-322)||(33489753-33489959)
chr5 (139-245)||(6535572-6535678)
[»] chr2 (7 HSPs)
chr2 (126-227)||(28167278-28167379)
chr2 (114-228)||(28165655-28165771)
chr2 (274-322)||(44904689-44904737)
chr2 (116-245)||(44906065-44906195)
chr2 (267-322)||(28167180-28167235)
chr2 (117-212)||(5696332-5696428)
chr2 (274-322)||(28165817-28165865)
[»] chr4 (5 HSPs)
chr4 (115-245)||(11148348-11148479)
chr4 (115-221)||(34538124-34538231)
chr4 (116-242)||(34539731-34539857)
chr4 (274-322)||(34538287-34538335)
chr4 (267-322)||(34539652-34539707)
[»] chr1 (5 HSPs)
chr1 (111-216)||(28360763-28360869)
chr1 (274-322)||(13229124-13229172)
chr1 (274-322)||(40767782-40767830)
chr1 (117-207)||(32849897-32849988)
chr1 (148-222)||(46605875-46605949)
[»] chr3 (3 HSPs)
chr3 (114-201)||(27662631-27662719)
chr3 (274-321)||(3149873-3149920)
chr3 (112-207)||(39870449-39870545)
[»] chr6 (1 HSPs)
chr6 (286-322)||(1134317-1134353)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 89 - 322
Target Start/End: Original strand, 19638511 - 19638743
Alignment:
Q  89 atccatgcaacaaatatagaactttttaggcttaaatagtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtg 188  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |||||| |    
T  19638511 atccatgcaacaagtatagaactttttaggcttaaatagtaaaatgtccttgtaagttagcgcattttttattttactccttgcatctttttttgttgcg 19638610  T
Q  189 aaacaactcttgtaattacttaacttttggaaatcggtccataccgtccatttccgtaagnnnnnnnnntttggtggttaacaaacgcatacgtggcact 288  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||| |||| ||||| |||          |||||||| ||||| ||||||||||| ||||    
T  19638611 aaacaactcttataattacttaaccttttgaaatcggttcatacagtccgtttccataa-aaaaaaacatttggtggctaacagacgcatacgtgacact 19638709  T
Q  289 tgataagatgacaactggtcttagtagagggact 322  Q
    ||||||||||  ||||||||||||||||||||||    
T  19638710 tgataagatggtaactggtcttagtagagggact 19638743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 38758381 - 38758171
Alignment:
Q  112 ttttaggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattactta 210  Q
    ||||||||||||||| |||||| |||| |||||| ||||||||||||  ||||||||| || ||||||| |||||| |||||||| |||||| |||||||    
T  38758381 ttttaggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaacccttgtatttactta 38758282  T
Q  211 acttttggaaatcggtccataccgtccatttccgtaagnnnnnnnnntttggtggttaacaaacgcatacgtggcacttgataagatgacaactggtctt 310  Q
    || ||| ||||| ||||| ||||||| |||||||| |           ||| ||| ||||| ||||||||||||||| |||| |  || |||||||||||    
T  38758281 accttttgaaattggtccctaccgtctatttccgtca-aaaaaatgcattgttggctaacagacgcatacgtggcacatgatgaattggcaactggtctt 38758183  T
Q  311 agtagagggact 322  Q
    ||||||||||||    
T  38758182 agtagagggact 38758171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 30045787 - 30045917
Alignment:
Q  116 aggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaactt 214  Q
    ||||||||||| ||| || ||||  ||||| ||||||||||||| ||| ||||| || ||||||| |||||| |||| |||||||||| ||| ||||| |    
T  30045787 aggcttaaataagtagaaggtccccgtaagttagcgcgttttttgtttaagtccatgtatctttttttgttgcgaaataactcttgtatttatttaacct 30045886  T
Q  215 ttggaaatcggtccataccgtccatttccgt 245  Q
    || ||||| ||||| | ||||| ||||||||    
T  30045887 tttgaaattggtccctgccgtctatttccgt 30045917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 38756655 - 38756754
Alignment:
Q  117 ggcttaaatagtaaaatg-tccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaacttt 215  Q
    |||||||||| ||||| | ||| |||||| ||||||||||||  ||||||||| || ||||||| |||||| |||| ||| |||||| || |||||||||    
T  38756655 ggcttaaatattaaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttt-ttgttgcgaaataacccttgtattttcttaacttt 38756753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 37556592 - 37556500
Alignment:
Q  116 aggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattac 207  Q
    ||||||||||| |||||| |||| |||||  | | ||||||||| ||||||||| ||||  |||| || ||| |||||||| |||||||||||    
T  37556592 aggcttaaataagtaaaaggtccctgtaaattggtgcgttttttgttttagtccctgcaattttttttcttgcgaaacaacccttgtaattac 37556500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 38756825 - 38756869
Alignment:
Q  278 tacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    ||||||||||||||| ||||  |||||| ||||||||||||||||    
T  38756825 tacgtggcacttgatgagattgcaactgctcttagtagagggact 38756869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 322
Target Start/End: Complemental strand, 33489959 - 33489753
Alignment:
Q  116 aggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaactt 214  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||  ||||||||| || ||||||| |||||| |||||||| | |||| |||||||||||    
T  33489959 aggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgttttagtccctgtatctttttttgttgcgaaacaacccctgtatttacttaactt 33489860  T
Q  215 ttggaaatcggtccataccgtccatttccgt-aagnnnnnnnnntttggtggttaacaaacgcatacgtggcacttgataagatgacaactggtcttagt 313  Q
    ||  |||| || || | ||||| |||||||| |||          ||| ||| ||||  ||||||| |||||||||||| || || ||||||||||||||    
T  33489859 tttaaaattggcccctgccgtctatttccgtcaagaaaacaca--ttgctggctaacggacgcatatgtggcacttgatgagttggcaactggtcttagt 33489762  T
Q  314 agagggact 322  Q
    |||||||||    
T  33489761 agagggact 33489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 6535678 - 6535572
Alignment:
Q  139 tgtaagatagcgcgttttttattttagtccttgcatc-ttttattgttgtgaaacaactcttgtaattacttaacttttggaaatcggtccataccgtcc 237  Q
    |||||| ||||| ||||||||||||||||| || ||| |||| |||||| |||||||| |||||| ||||||||| ||| ||||| ||| | | |||||     
T  6535678 tgtaagttagcg-gttttttattttagtccatgtatcttttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggttcttgccgtct 6535580  T
Q  238 atttccgt 245  Q
    ||||||||    
T  6535579 atttccgt 6535572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 28167379 - 28167278
Alignment:
Q  126 agtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaacttttggaaatcgg 225  Q
    ||||||| |||| |||||| ||||||||||||  |||||||||||| ||||||| |||||| |||||||| |||||| ||||||||| ||| ||||| ||    
T  28167379 agtaaaaggtccctgtaagttagcgcgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattgg 28167280  T
Q  226 tc 227  Q
    ||    
T  28167279 tc 28167278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 28165655 - 28165771
Alignment:
Q  114 ttaggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtg-aaacaactcttgtaattacttaa 211  Q
    ||||||||||||| |||||| |||| |||||| ||||||||||||  ||||||||| || ||||||| |||||| | ||||||| |||||| || |||||    
T  28165655 ttaggcttaaatatgtaaaaggtccatgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaaacaacccttgtattttcttaa 28165754  T
Q  212 cttttggaaatcggtcc 228  Q
    ||||| ||||| |||||    
T  28165755 ctttttgaaattggtcc 28165771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 44904689 - 44904737
Alignment:
Q  274 cgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  44904689 cgcatacatggcacttgatgagatgacaactgctcttagtagagggact 44904737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 44906195 - 44906065
Alignment:
Q  116 aggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaactt 214  Q
    ||||||||||| |||||| |||| | |||| ||||||||||||  ||||| |||||| ||||||| || ||| |||||||   ||||| ||||||||| |    
T  44906195 aggcttaaataagtaaaaggtccctataagttagcgcgtttttggttttaatccttgtatctttttttattgcgaaacaatctttgtatttacttaacct 44906096  T
Q  215 ttggaaatcggtccataccgtccatttccgt 245  Q
    || ||||| ||||  | ||||| ||||||||    
T  44906095 tttgaaattggtctctgccgtctatttccgt 44906065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 28167235 - 28167180
Alignment:
Q  267 taacaaacgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    ||||| ||||||| ||||||| |||| || || |||||||||||||||||||||||    
T  28167235 taacagacgcatatgtggcacatgatgagttggcaactggtcttagtagagggact 28167180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 5696428 - 5696332
Alignment:
Q  117 ggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaac 212  Q
    |||||||||| | |||| |||| |||||| | |||| |||||  |||||||| ||| ||||||| |||||||||||||||   |||| |||||||||    
T  5696428 ggcttaaataagaaaaaggtccatgtaagtttgcgcatttttagttttagtctttgtatctttttttgttgtgaaacaacctctgtatttacttaac 5696332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 28165817 - 28165865
Alignment:
Q  274 cgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    |||||||||| |||||||| |||||  ||||| ||||||||||||||||    
T  28165817 cgcatacgtgacacttgatgagatggaaactgctcttagtagagggact 28165865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 11148348 - 11148479
Alignment:
Q  115 taggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaact 213  Q
    |||||||||||| |||||| |||| |||||| ||||||||||||  ||||||||  |  ||||||| |||||| |||||||| |||||| |||||||||     
T  11148348 taggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtcgctatatctttttttgttgcgaaacaacccttgtatttacttaacc 11148447  T
Q  214 tttggaaatcggtccataccgtccatttccgt 245  Q
    ||| ||||| ||||| | ||||| ||||||||    
T  11148448 ttttgaaattggtccctgccgtctatttccgt 11148479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 34538124 - 34538231
Alignment:
Q  115 taggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaact 213  Q
    |||||||||||| |||||| ||||  ||||| |||| |||||||  |||||||||||| ||||||| |||||| |||||||| |||||| || |||||||    
T  34538124 taggcttaaatatgtaaaaggtcccggtaagttagcacgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtattttcttaact 34538223  T
Q  214 tttggaaa 221  Q
    ||| ||||    
T  34538224 ttttgaaa 34538231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 34539857 - 34539731
Alignment:
Q  116 aggcttaaatagtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaacttt 215  Q
    |||||||||||   ||| |||| |||||| ||||||||||||  ||||| ||  || ||||||| |||||| |||||||| ||| || ||||||||| ||    
T  34539857 aggcttaaataagtaaaggtccatgtaagttagcgcgtttttggttttaatctctgtatctttttttgttgcgaaacaacccttatatttacttaacctt 34539758  T
Q  216 tggaaatcggtccataccgtccatttc 242  Q
    | ||||| ||||| ||||||| |||||    
T  34539757 ttgaaattggtccctaccgtctatttc 34539731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 34538287 - 34538335
Alignment:
Q  274 cgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  34538287 cgcatacgtggcacttgatgagatggcaactgctcttagtagagggact 34538335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 34539707 - 34539652
Alignment:
Q  267 taacaaacgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    ||||| ||||||||||| ||| |||| || || |||||||||||||||||||||||    
T  34539707 taacagacgcatacgtgacacatgatgagttggcaactggtcttagtagagggact 34539652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 28360763 - 28360869
Alignment:
Q  111 tttttaggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattactt 209  Q
    |||| ||||||||||| || ||| ||||||||||| | ||||  ||||  |||||||||||| ||||||| |||||| |||||||||||||||  | |||    
T  28360763 ttttaaggcttaaatatgttaaaggtccttgtaagttggcgcacttttggttttagtccttgtatctttttttgttgcgaaacaactcttgtatcttctt 28360862  T
Q  210 aactttt 216  Q
    |||||||    
T  28360863 aactttt 28360869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 13229172 - 13229124
Alignment:
Q  274 cgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  13229172 cgcatatgtggcacttgatgagatgacaactgctcttagtagagggact 13229124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 40767782 - 40767830
Alignment:
Q  274 cgcatacgtggcacttgataagatgacaactggtcttagtagagggact 322  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  40767782 cgcatacgtggcacttgatgagatggcaactgctcttagtagagggact 40767830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 32849988 - 32849897
Alignment:
Q  117 ggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattac 207  Q
    |||||||||| |||||| |||| |||||  | ||||||||||| ||||||||| ||||  |||| || ||| |||||||| |||||||||||    
T  32849988 ggcttaaataagtaaaaggtccctgtaaattggcgcgttttttgttttagtccctgcaattttttttcttgcgaaacaacccttgtaattac 32849897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 46605949 - 46605875
Alignment:
Q  148 gcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattacttaacttttggaaat 222  Q
    ||||||||||| ||||||||| || |  |||| |||||| |||||||| |||||| || |||||||||| |||||    
T  46605949 gcgcgttttttgttttagtccctgtaagtttttttgttgcgaaacaacccttgtattttcttaactttttgaaat 46605875  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 27662719 - 27662631
Alignment:
Q  114 ttaggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgt 201  Q
    ||||||||||||| |||||| ||||  ||||| ||||||||||||| ||||||| |  | ||||||| ||||||||||||||| |||||    
T  27662719 ttaggcttaaataagtaaaaggtcccggtaagttagcgcgttttttgttttagttcacgtatctttttttgttgtgaaacaacccttgt 27662631  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 3149920 - 3149873
Alignment:
Q  274 cgcatacgtggcacttgataagatgacaactggtcttagtagagggac 321  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||    
T  3149920 cgcatacgtggcacttgatgagatgacagctgctcttggtagagggac 3149873  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 39870449 - 39870545
Alignment:
Q  112 ttttaggcttaaata-gtaaaatgtccttgtaagatagcgcgttttttattttagtccttgcatcttttattgttgtgaaacaactcttgtaattac 207  Q
    ||||||||||||||| |||||| || |||||||| |  |||||||||| ||||||| |||| |  |||| || ||| |||||| | |||||||||||    
T  39870449 ttttaggcttaaataagtaaaaggttcttgtaagttgacgcgttttttgttttagttcttgtaagtttttttcttgcgaaacagcccttgtaattac 39870545  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 1134317 - 1134353
Alignment:
Q  286 acttgataagatgacaactggtcttagtagagggact 322  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  1134317 acttgatgagatgacaactggacttagtagagggact 1134353  T

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