View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_21 (Length: 358)
Name: NF3728_low_21
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_21 |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 27251968 - 27251611
Alignment:
| Q |
1 |
cctccgtcaacaccatcattaactgctagtgttgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacga |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251968 |
cctccgtcaacaccatcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacga |
27251869 |
T |
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| Q |
101 |
acaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251868 |
acaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagc |
27251769 |
T |
|
| Q |
201 |
tgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagcttgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27251768 |
tgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattgg |
27251669 |
T |
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| Q |
301 |
ttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaact |
358 |
Q |
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| T |
27251668 |
ttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaact |
27251611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 21196219 - 21195862
Alignment:
| Q |
1 |
cctccgtcaacaccatcattaactgctagtgttgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacga |
100 |
Q |
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| T |
21196219 |
cctccgtcaacaccatcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacga |
21196120 |
T |
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| Q |
101 |
acaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagc |
200 |
Q |
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| T |
21196119 |
acaattccttcttggcttcttcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagc |
21196020 |
T |
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| Q |
201 |
tgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagcttgg |
300 |
Q |
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| T |
21196019 |
tgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattgg |
21195920 |
T |
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| Q |
301 |
ttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaact |
358 |
Q |
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| T |
21195919 |
ttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaact |
21195862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 82 - 358
Target Start/End: Complemental strand, 27268721 - 27268445
Alignment:
| Q |
82 |
taagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcgga |
181 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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| T |
27268721 |
taagagtatcctttgacaaacaattccttcttggcttcctcagattcaccctcaccagtgtactttccaagttgagcaagtgagttggacttagcacgga |
27268622 |
T |
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| Q |
182 |
aaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtg |
281 |
Q |
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|||| || |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
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| T |
27268621 |
aaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctcttgcatatgagaatgacacgtg |
27268522 |
T |
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| Q |
282 |
ccatgggtttggagcttggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaact |
358 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27268521 |
ccatgggtttggagattggttcatggcattcaagttgagcgttgcttcaacctcagattgtccaccagacaaaaact |
27268445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 49363995 - 49364097
Alignment:
| Q |
256 |
gctcttgcgtatgagaacgacacgtgccatgggtttggagcttggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaa |
355 |
Q |
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|||| |||||||||||| ||||| ||||||||||| ||| ||||||||| ||||| | || || ||||||||||| || ||||||||||| ||||||| |
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| T |
49363995 |
gctcgtgcgtatgagaaagacacatgccatgggttgggactttggttcatagcattaagatttagagttgcttcaacttctgattgtccacctgacaaaa |
49364094 |
T |
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| Q |
356 |
act |
358 |
Q |
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||| |
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| T |
49364095 |
act |
49364097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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