View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_22 (Length: 339)
Name: NF3728_low_22
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 30719241 - 30719548
Alignment:
| Q |
16 |
aaaaggaaaacatagagaaaaaggagtgttaacaacaagatttactcttgattccttaattgtattaatagatacacaagtatatacataaatcgcaaat |
115 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719241 |
aaaaggaaaacgtagagaaaaaggagtgttaacaacaagatttactcttgattccttaattgtattaatagatacacaagtatatacataaatcgcaaat |
30719340 |
T |
|
| Q |
116 |
cacattctatgtagctgctaaatgcaagaacaaccacattaatttagcataatttacaaagtttaggtaacatacgcattaagtttggaagttaagcagt |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719341 |
cacattctatgtagctgctaaatggaagaacaaccacattaatttagcataatttacatagtttaggtaacatacgcattaagtttggaagttaagcagt |
30719440 |
T |
|
| Q |
216 |
agggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30719441 |
agggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccat |
30719540 |
T |
|
| Q |
316 |
gaattctt |
323 |
Q |
| |
|
|||||||| |
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|
| T |
30719541 |
gaattctt |
30719548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 169 - 323
Target Start/End: Complemental strand, 30881965 - 30881811
Alignment:
| Q |
169 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
30881965 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactc |
30881866 |
T |
|
| Q |
269 |
ccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
323 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881865 |
ccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattctt |
30881811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 169 - 323
Target Start/End: Original strand, 44730830 - 44730984
Alignment:
| Q |
169 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgc |
268 |
Q |
| |
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|||||||||||||||||| || | |||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| || | |
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| T |
44730830 |
ttacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactc |
44730929 |
T |
|
| Q |
269 |
ccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
323 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
44730930 |
ccctttgcatcctaatgtatccttcttcgccccaatcagttccccatgagttctt |
44730984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 155 - 323
Target Start/End: Complemental strand, 30893062 - 30892894
Alignment:
| Q |
155 |
taatttagcataatttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttc |
254 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||| | || ||||||| | ||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
30893062 |
taatttagcataatttacatagtttggggaatataagtatcaagtttgtctttcaagcagtgggataagatgccatcattgcaatgccacaaagtccttg |
30892963 |
T |
|
| Q |
255 |
ggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
323 |
Q |
| |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30892962 |
agcagcatctacgctcctttgcatcctaatgtatccttcttcaccccaatcatttccccatgaattctt |
30892894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 314
Target Start/End: Original strand, 16867217 - 16867362
Alignment:
| Q |
169 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgc |
268 |
Q |
| |
|
||||||||||||| ||||||| | ||||| |||| | ||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||| || | |
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| T |
16867217 |
ttacaaagtttagataacataagtattaattttgacatttaagcagtagggtatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacac |
16867316 |
T |
|
| Q |
269 |
ccctttgcatcctaatgtatccttcttcaccccaatcagttcccca |
314 |
Q |
| |
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| ||||||||| |||||||||||||||||||||| || |||||||| |
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| T |
16867317 |
ctctttgcatcataatgtatccttcttcaccccattcggttcccca |
16867362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 30893144 - 30893080
Alignment:
| Q |
31 |
agaaaaaggagtgttaacaacaagatttactcttgattccttaattgtattaatagatacacaag |
95 |
Q |
| |
|
|||||||| || |||||||||| ||||||| || |||||||||||||||||||| ||||||||| |
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|
| T |
30893144 |
agaaaaagaagagttaacaacagtatttacttttcattccttaattgtattaataaatacacaag |
30893080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 31185268 - 31185320
Alignment:
| Q |
271 |
ctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
323 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| |||| |||||||||||||| |
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| T |
31185268 |
ctttgcatccttatgtaccctttttcaccccacacagtgccccatgaattctt |
31185320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 323
Target Start/End: Complemental strand, 8899579 - 8899426
Alignment:
| Q |
170 |
tacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgcc |
269 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||| | ||||||||||||||| || ||||| || || || || || |
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| T |
8899579 |
tacaaagtttaggtaacataagtattaagtttggcatttaagcagtagggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcc |
8899480 |
T |
|
| Q |
270 |
cctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
323 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
8899479 |
cctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagttctt |
8899426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 31727696 - 31727584
Alignment:
| Q |
211 |
gcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttc |
310 |
Q |
| |
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||||| || ||||||| || ||||||||||||||| |||||||| | ||||| || |||||||||||||||||||| |||||||||||||| | ||||| |
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| T |
31727696 |
gcagttggataagatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgcatcctaatgtacccttcttcaccccattgagttc |
31727597 |
T |
|
| Q |
311 |
cccatgaattctt |
323 |
Q |
| |
|
||||||||||||| |
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|
| T |
31727596 |
cccatgaattctt |
31727584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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