View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_23 (Length: 334)

Name: NF3728_low_23
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_23
NF3728_low_23
[»] chr7 (1 HSPs)
chr7 (17-314)||(37497157-37497454)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 37497157 - 37497454
Alignment:
Q  17 atgtccgatcccaacgttcacgtggggtccacatttcaagtttacacagctaaaccaacccacatcaatttaaatccacaccgttaattaagagtttaag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | || |||||| ||||||||||||||||||||||    
T  37497157 atgtccgatcccaacgttcacgtggggtccacatttcaagtttacacgactaaaccaacccacatgagttcaaatcctcaccgttaattaagagtttaag 37497256  T
Q  117 gtggttcctcattgtttgaacacatcattgcggcgttcctagtcactactccacctcacattccttatcttccatcttctcatcaccatcctcgagtttc 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497257 gtggttcctcattgtttgaacacatcatcgcggcgttcctagtcactactccacctcacattccttatcttccatcttctcatcaccatcctcgagtttc 37497356  T
Q  217 cgatgacaacttaatttcataacccccaaaagaaaaaatgaacactttaatccattcttcaaaccattacctttgtagggtaccctaccctttagtct 314  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497357 cgacgacaacttaatttcataacccccaaaagaaaaaatgaacactttaatccattcttcaaaccattacctttgtagggtaccctaccctttagtct 37497454  T

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