View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_24 (Length: 329)
Name: NF3728_low_24
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 50616048 - 50616190
Alignment:
| Q |
21 |
taaagaagcttgtcaataaagtaaactgaagagtatcgtcacatggaggaggagcccaaagaagcctgtcattaagtaaactaaatattatagagtaagg |
120 |
Q |
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| T |
50616048 |
taaagaagcttgtcaataaagtaaactgaagagtatcgtcacatggaggaggagcccaaagaagcatgtcattaagtaaactaaatattatagagtaagg |
50616147 |
T |
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| Q |
121 |
gaagcactcacaacgccatgcatctatgaggaattatatagtt |
163 |
Q |
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| T |
50616148 |
gaagcactcacaacgccatgcatctattaggaattatatagtt |
50616190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 50616514 - 50616654
Alignment:
| Q |
172 |
taacgaacatgattaagcttacatttcatttgccactctttctttctcctcaagtacgttcctctacctgatgcattttatgggtgagttcttcggcttg |
271 |
Q |
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| T |
50616514 |
taacgaacatgattaagcttacatttcatttgccactctttctttctcctcaagt----tcctctacctgatgcattttatgggtgagttcttcggcttg |
50616609 |
T |
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| Q |
272 |
ggattctatgtgctgcttaagtaaattgaactcttcctttgatga |
316 |
Q |
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| T |
50616610 |
ggattctatgtgctacttaagtaaattgaactcttcctttgatga |
50616654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 313
Target Start/End: Complemental strand, 12779264 - 12779130
Alignment:
| Q |
175 |
cgaacatgattaagcttacatttcatttgccactctttctttctcctcaagtacgttcctctacctgatgcattttatgggtgagttcttcggcttggga |
274 |
Q |
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| T |
12779264 |
cgaacatgatcaagcttacattttattttccactctttctttctcttcaagt----tcctctacctgatgcattctatgggtgagttatttagcttggga |
12779169 |
T |
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| Q |
275 |
ttctatgtgctgcttaagtaaattgaactcttcctttga |
313 |
Q |
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| T |
12779168 |
ttttatgtggtgcttaagtaaactcaactcttcccttga |
12779130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 5935268 - 5935186
Alignment:
| Q |
70 |
aggagcccaaagaagcctgtcattaagtaaactaaatattatagagtaagggaagcactcacaacgccatgcatctatgagga |
152 |
Q |
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|||| ||||||||||| ||||| |||||||||| || | |||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
5935268 |
aggaacccaaagaagcttgtcagtaagtaaactgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgagga |
5935186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 19908516 - 19908398
Alignment:
| Q |
184 |
ttaagcttacattt-catttgccactctttctttctcctcaagtacgttcctctacctgatgcattttatgggtgagttcttcggcttgggattctatgt |
282 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |||||| ||||| ||| | |||||| ||||| |||||||| ||| || | |||||||| |
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| T |
19908516 |
ttaagcttacattttcatttgccactctttccttctcttcaagt----tcctccacccggtgcattctatggtcgagttctttggcctgagcttctatgt |
19908421 |
T |
|
| Q |
283 |
gctgcttaagtaaattgaactct |
305 |
Q |
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| T |
19908420 |
gctgcttaagtaaactcaactct |
19908398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 37331177 - 37331068
Alignment:
| Q |
181 |
tgattaagcttacattt-catttgccactctttctttctcctcaagtacgttcctctacctgatgcattttatgggtgagttcttcggcttgggattcta |
279 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||||| ||||| ||| | |||||| | ||| |||||||| ||| |||| ||||| |
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| T |
37331177 |
tgattaagcttacattttcatttgccactctttccttctcttcaagt----tcctccacccggtgcattctgtggtcgagttctttggcctgggcttcta |
37331082 |
T |
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| Q |
280 |
tgtgctgcttaagt |
293 |
Q |
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|||||||||||||| |
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| T |
37331081 |
tgtgctgcttaagt |
37331068 |
T |
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