View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_26 (Length: 304)

Name: NF3728_low_26
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_26
NF3728_low_26
[»] chr4 (17 HSPs)
chr4 (138-301)||(4846551-4846714)
chr4 (162-302)||(5192591-5192731)
chr4 (148-294)||(5141079-5141225)
chr4 (163-301)||(5165239-5165377)
chr4 (8-112)||(7121590-7121694)
chr4 (148-301)||(5205291-5205444)
chr4 (8-112)||(7139409-7139513)
chr4 (162-301)||(5178448-5178587)
chr4 (1-102)||(5205175-5205277)
chr4 (117-208)||(7122027-7122116)
chr4 (133-222)||(4848225-4848310)
chr4 (8-46)||(4846781-4846819)
chr4 (176-222)||(4851173-4851219)
chr4 (8-46)||(4851303-4851341)
chr4 (8-46)||(5164140-5164178)
chr4 (31-92)||(5178328-5178392)
chr4 (8-46)||(5192462-5192500)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 138 - 301
Target Start/End: Complemental strand, 4846714 - 4846551
Alignment:
Q  138 cacaatatacatacattcattcctaaaaaa-tgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaataggaaatcaaggat 236  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||   || ||||||||    
T  4846714 cacaatatac-tacatacattcctaaaaaaatgaagctgggtttgataattagtttccttttatattttgtgacattgatgttaatgctaactcaaggat 4846616  T
Q  237 gcaacggttgcatagagaaagagagaatagcgttgttggagatcaaacactacatcgtgtcacaa 301  Q
    | ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  4846615 gtaacggttgcttagagaaagagagaatagggttgttggagatcaagcactacatcttgtcacaa 4846551  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 5192591 - 5192731
Alignment:
Q  162 aaaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaataggaaatcaaggatgcaacggttgcatagagaaagagag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||| ||||||||| |||||||||||||    
T  5192591 aaaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaatgctaactcaaggatgtaacggttgcttagagaaagagag 5192690  T
Q  262 aatagcgttgttggagatcaaacactacatcgtgtcacaaa 302  Q
    |||| | ||||||||||||||||||||| || |||||||||    
T  5192691 aatatcattgttggagatcaaacactacttcttgtcacaaa 5192731  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 5141079 - 5141225
Alignment:
Q  148 atacattcattcctaaaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaataggaaatcaaggatgcaacggttgc 247  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||   |||||||||||| || || |||    
T  5141079 atacatacatttctaaaaaatgaagttgggtttgataattagttcccttttatattttgtgacattgatgttaatgcaaaatcaaggatgtaagggatgc 5141178  T
Q  248 atagagaaagagagaatagcgttgttggagatcaaacactacatcgt 294  Q
     |||||||||||||||||| | ||||||||||||| |||||||||||    
T  5141179 ttagagaaagagagaatagggctgttggagatcaagcactacatcgt 5141225  T

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Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 5165239 - 5165377
Alignment:
Q  163 aaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaataggaaatcaaggatgcaacggttgcatagagaaagagaga 262  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||  || ||||||||   |||||||||||| ||||| ||| ||||||||||||||    
T  5165239 aaaaatgaagttgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagaga 5165338  T
Q  263 atagcgttgttggagatcaaacactacatcgtgtcacaa 301  Q
    |||| ||||||||||||||| ||||||||| ||||||||    
T  5165339 atagggttgttggagatcaagcactacatcttgtcacaa 5165377  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 7121590 - 7121694
Alignment:
Q  8 tcaactccaagtctttcttatgcttcgaggaagtttctttgtgatgaaaaatgtctcatattttagtgctatatataataatataaggtgattgagtggt 107  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||| || |||||||||||||||||||||||||||| ||||    
T  7121590 tcaactccaagtctttcttgtgcttcgaggaagtttctttgtaatgaaaaatatctcatctttaagggctatatataataatataaggtgattgattggt 7121689  T
Q  108 tatag 112  Q
    |||||    
T  7121690 tatag 7121694  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 301
Target Start/End: Original strand, 5205291 - 5205444
Alignment:
Q  148 atacattcattcctaaaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaataggaaatcaaggatgcaacggttgc 247  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||| |||||| |||||| |||||||||||||||||  |||| ||||||| ||||||||     
T  5205291 atacatacatttctaaaaaatgaagttgggtttgataattagttcccttttttattttatgacattgatgttaatacaaaatgaaggatgtaacggttgt 5205390  T
Q  248 atagagaaagagagaatagcgttgttggagatcaaacactacatcgtgtcacaa 301  Q
     ||||||| |||||||| | |||||| ||||||||  | ||||| |||||||||    
T  5205391 gtagagaatgagagaatggggttgttagagatcaagaagtacatagtgtcacaa 5205444  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 7139409 - 7139513
Alignment:
Q  8 tcaactccaagtctttcttatgcttcgaggaagtttctttgtgatgaaaaatgtctcatattttagtgctatatataataatataaggtgattgagtggt 107  Q
    |||||||||||||||| || |||||| | ||||||||||||| ||||||||| |||||| ||| || |||||||||||||||||||||||||||| ||||    
T  7139409 tcaactccaagtcttttttgtgcttccaagaagtttctttgtaatgaaaaatatctcatctttaagggctatatataataatataaggtgattgattggt 7139508  T
Q  108 tatag 112  Q
    |||||    
T  7139509 tatag 7139513  T

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Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 301
Target Start/End: Original strand, 5178448 - 5178587
Alignment:
Q  162 aaaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaataggaaatcaaggatgcaacggttgcatagagaaagagag 261  Q
    ||||||||||| |||||||||||   |||| |||||||||||||||||  || ||||||||   |||||||||||| || || ||| ||||||| |||||    
T  5178448 aaaaaatgaagttgggtttgatattcagttcccttttatattttgtgattttaatgttaatgcaaaatcaaggatgtaagggatgcttagagaaggagag 5178547  T
Q  262 aatagcgttgttggagatcaaacactacatcgtgtcacaa 301  Q
    ||||| | ||||||||||||| ||||||||| ||||||||    
T  5178548 aatagggctgttggagatcaagcactacatcttgtcacaa 5178587  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5205175 - 5205277
Alignment:
Q  1 tcaaatatcaactccaagtctttcttatgcttcgaggaagtttctttgtgatgaaaa-atgtctcatattttagtgctatatataataatataaggtgat 99  Q
    ||||||||||| || | ||||||||| ||||||| ||||||||||||   || |||| ||||||||| | |||||||||||||||||||||||||| |||    
T  5205175 tcaaatatcaattctatgtctttcttgtgcttcgtggaagtttctttagaataaaaacatgtctcatctgttagtgctatatataataatataaggggat 5205274  T
Q  100 tga 102  Q
    |||    
T  5205275 tga 5205277  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 7122116 - 7122027
Alignment:
Q  117 ttgagacaaaactggaagtaacacaatatacatacattcattcctaaaaaatgaagctgggtttgataaatagtttccttttatattttgtg 208  Q
    |||| ||||||||| |||||||||||||| |||||||  ||| || ||||||||||||||||||||||  ||||| |||||| |||||||||    
T  7122116 ttgaaacaaaactgaaagtaacacaatatgcatacat--atttctcaaaaatgaagctgggtttgatatttagttcccttttttattttgtg 7122027  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 4848310 - 4848225
Alignment:
Q  133 agtaacacaatatacatacattcattcctaaaaaatgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaat 222  Q
    |||||||||||| ||||||||| ||     |||||| ||| |||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  4848310 agtaacacaataaacatacatttatc----aaaaataaagttgggtttgataattagtttccatttttattttgtgacattgatgttaat 4848225  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 4846819 - 4846781
Alignment:
Q  8 tcaactccaagtctttcttatgcttcgaggaagtttctt 46  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  4846819 tcaactccaagtctttcttatgcttggaggaagtttctt 4846781  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 4851219 - 4851173
Alignment:
Q  176 ggtttgataaatagtttccttttatattttgtgacattgatgttaat 222  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||    
T  4851219 ggtttgataattagtttccatttttattttgtgacattgatgttaat 4851173  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 4851341 - 4851303
Alignment:
Q  8 tcaactccaagtctttcttatgcttcgaggaagtttctt 46  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4851341 tcaactccaagtctttcttatacttcgaggaagtttctt 4851303  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 5164140 - 5164178
Alignment:
Q  8 tcaactccaagtctttcttatgcttcgaggaagtttctt 46  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  5164140 tcaactccaagtctttcttgtgcttcaaggaagtttctt 5164178  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 5178328 - 5178392
Alignment:
Q  31 ttcgaggaagtttctttgtgatgaaa---aatgtctcatattttagtgctatatataataatata 92  Q
    ||||||||||||||||||| ||||||   |||  ||| ||||||| |||||||||||||||||||    
T  5178328 ttcgaggaagtttctttgtaatgaaaattaattactcgtattttaatgctatatataataatata 5178392  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 5192462 - 5192500
Alignment:
Q  8 tcaactccaagtctttcttatgcttcgaggaagtttctt 46  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  5192462 tcaactccaagtctttcttttgcttggaggaagtttctt 5192500  T

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