View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_27 (Length: 294)

Name: NF3728_low_27
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_27
NF3728_low_27
[»] chr8 (4 HSPs)
chr8 (18-227)||(10643152-10643361)
chr8 (18-227)||(32712458-32712686)
chr8 (18-69)||(11682019-11682070)
chr8 (167-219)||(29373284-29373336)
[»] chr7 (1 HSPs)
chr7 (25-227)||(23923288-23923490)
[»] scaffold0586 (1 HSPs)
scaffold0586 (18-227)||(3726-3935)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 10643152 - 10643361
Alignment:
Q  18 ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggca 117  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  10643152 ttttctgctatggtttgtttgtgcctcggctgggattggctttaaggtccatttaggcgtttttttaggtggtttaggcgtgtcagtatgttgtgtggca 10643251  T
Q  118 gcagctgcgtgctgttgctacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatatt 217  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10643252 gcagctgcgtgctgttgctgcagcttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatgtatt 10643351  T
Q  218 atcttgattc 227  Q
    ||||||||||    
T  10643352 atcttgattc 10643361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 32712686 - 32712458
Alignment:
Q  18 ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggca 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||| |||||    
T  32712686 ttttctgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgtttttttaggtggtttaggtgtgtcagtatgttgtatggca 32712587  T
Q  118 gcagctgcgtgctgttgc-------------------tacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtg 198  Q
    ||||||||||||||||||                   | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32712586 gcagctgcgtgctgttgcagcagctgcgtgctgttgctgcagcttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtg 32712487  T
Q  199 gggcttgtgttaatatattatcttgattc 227  Q
    |||||||||||||||||||||||||||||    
T  32712486 gggcttgtgttaatatattatcttgattc 32712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 11682070 - 11682019
Alignment:
Q  18 ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccat 69  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  11682070 ttttctgctatggtttgtctgtgcctcggctgggattgcctttagggtccat 11682019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 29373284 - 29373336
Alignment:
Q  167 tcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattat 219  Q
    |||||||||| |||||||||| ||||||||  |||||||||||||||||||||    
T  29373284 tcgttgcctcaccgtttagcatgtcttgtgccgggcttgtgttaatatattat 29373336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 23923490 - 23923288
Alignment:
Q  25 ctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggcagcagctg 124  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  23923490 ctatggtttgtctgtgcctcggcttggattggctttaaggtccatttaggcatttttttaggtggtttaggcgtgtcagtatgttgtgtggcagcagctg 23923391  T
Q  125 cgtgctgttgctacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattatcttga 224  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23923390 cgtgctgttgctgcaacttctgttttggcctcttttgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattatgttga 23923291  T
Q  225 ttc 227  Q
    |||    
T  23923290 ttc 23923288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 3726 - 3935
Alignment:
Q  18 ttttatgctatggtttgtctgtgcctcggctgggattggctttaaggtccatttaggcgnnnnnnnaggtggtttaggcgtgtcagtatgttgtgtggca 117  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  3726 ttttctgctatggtttgtctgtgcctcggttgggattggctttaaggtccatttaggcgtttttttaggtggtttaggcgtgtcagtatgttgtgtggca 3825  T
Q  118 gcagctgcgtgctgttgctacaacttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatatt 217  Q
    |||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3826 gcaattgcgtgctgttgctgcagcttctgttttggcctcttctgttgtatcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatatt 3925  T
Q  218 atcttgattc 227  Q
    || |||||||    
T  3926 attttgattc 3935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University