View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_29 (Length: 281)
Name: NF3728_low_29
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 41738417 - 41738669
Alignment:
| Q |
16 |
cattgttcattattcaatgattggatcgtaattgaagattttacaaagttgagaacactataaaataatacaatttttcttaaggatcagcgaattttct |
115 |
Q |
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| T |
41738417 |
cattgttcattattcaatgattgggtcgtaattgaagattttacaaagttgagaacactataaaataatacaatttttcttaaggatcaacgaattttct |
41738516 |
T |
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| Q |
116 |
cttcaaattggattgcaccatttggtaaacagcaaaccaaccattttcccaaaagaatgaaagttctggtttatcacatacaacacttccacaaaacata |
215 |
Q |
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| T |
41738517 |
cttcaaattggattgcaccatttggtaaacagcaaaccaaccattttcccaaaagaatgaaagttctggtttatcacatacaacacttccacaaaacata |
41738616 |
T |
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| Q |
216 |
cctcccacacaacatggttgcaacggattcatcacagtatacataatagagaa |
268 |
Q |
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| T |
41738617 |
cctcccacacaacatggttgcaacggattcatcacagtatacataatagagaa |
41738669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 41747236 - 41747268
Alignment:
| Q |
217 |
ctcccacacaacatggttgcaacggattcatca |
249 |
Q |
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| T |
41747236 |
ctcccacacaacatggttgcaatggattcatca |
41747268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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