View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_34 (Length: 245)

Name: NF3728_low_34
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_34
NF3728_low_34
[»] chr3 (19 HSPs)
chr3 (1-220)||(27909701-27909920)
chr3 (1-204)||(28079323-28079526)
chr3 (95-242)||(27998471-27998618)
chr3 (1-220)||(28513326-28513545)
chr3 (1-217)||(28492345-28492561)
chr3 (5-220)||(28177939-28178145)
chr3 (1-217)||(28472304-28472520)
chr3 (9-204)||(11408713-11408908)
chr3 (5-220)||(27962771-27962986)
chr3 (1-220)||(28129853-28130072)
chr3 (5-220)||(27464356-27464571)
chr3 (1-220)||(28143781-28144000)
chr3 (48-220)||(17749365-17749537)
chr3 (48-220)||(19050685-19050857)
chr3 (6-202)||(26145230-26145426)
chr3 (118-204)||(28047350-28047436)
chr3 (6-88)||(18081215-18081297)
chr3 (142-209)||(27343891-27343958)
chr3 (6-73)||(27370325-27370392)
[»] chr7 (1 HSPs)
chr7 (1-220)||(8694675-8694894)
[»] chr5 (1 HSPs)
chr5 (1-204)||(26027195-26027398)
[»] chr4 (2 HSPs)
chr4 (1-204)||(9330250-9330453)
chr4 (1-204)||(9384033-9384236)
[»] scaffold0854 (1 HSPs)
scaffold0854 (6-73)||(4387-4454)
[»] scaffold1344 (1 HSPs)
scaffold1344 (147-209)||(578-640)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27909920 - 27909701
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  27909920 aaagaggaccattgaacaattcttccaaattatccattccttcgagctctagtacaaccaacttggagaagacttttgatacttgagagatgacatgctt 27909821  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  27909820 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgtttcaaaggaatcatctcaggtatgatattt 27909721  T
Q  201 ctccctcccccctccattct 220  Q
    |||| ||||||||| |||||    
T  27909720 ctccatcccccctcgattct 27909701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 28079526 - 28079323
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||| ||||||||       |||||    
T  28079526 aaagaggaccattgaacaattcttccaaattatccattcctttgagctttagtacaaccaacttggagaagacttttgacacttgagactcagtgtgctt 28079427  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  28079426 agtgtcaatgaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccattggaacaatatcaggtatgatattt 28079327  T
Q  201 ctcc 204  Q
    ||||    
T  28079326 ctcc 28079323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 27998618 - 27998471
Alignment:
Q  95 atgcttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatg 194  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27998618 atgcttagtgtcaatgaggcattgtaattgtgaaatggatctcaaatcaagctcaactagatcattcataccatgacccataggaatcatctcaggtatg 27998519  T
Q  195 atatttctccctcccccctccattctatttatcttaagaacctatgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27998518 atatttctccctcccccctccattctatttatcttaagaacctctgct 27998471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28513326 - 28513545
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  ||| ||    
T  28513326 aaagaggacctttgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagattcgatatgttt 28513425  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
     |||||||| ||||| |||| |||||||||| |||||||   |||||| ||||||||||||||||||  |||||||||||  || ||||| || ||||||    
T  28513426 ggtgtcaatgaggcattgtagttgtgaaatgcatctcaaagtaagctcgactagatcattcataccacaatccataggaacaatttcaggaatcatattt 28513525  T
Q  201 ctccctcccccctccattct 220  Q
    |||| |||||||||||||||    
T  28513526 ctccatcccccctccattct 28513545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 28492345 - 28492561
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||      ||| ||    
T  28492345 aaagaggacctttgaacaattcttccaaattatccattccttcgagctctagtacaaccaacttggagaatacttttgatactagagattcagtatgttt 28492444  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||||||| ||||| |||| |||||||||    |||||   |||||  |||||||||||||||||||||||||||||||  |||||||| || ||||||    
T  28492445 agtgtcaatgaggcattgtagttgtgaaatactactcaaactaagcttgactagatcattcataccatgatccataggaacaatctcaggcatcatattt 28492544  T
Q  201 ctccctcccccctccat 217  Q
    |||| ||||||||||||    
T  28492545 ctccatcccccctccat 28492561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 28178145 - 28177939
Alignment:
Q  5 aggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttagtg 104  Q
    ||||||||||||||||||||| |||||||||||||||| ||| | ||||||| |||||||||||||||||||||| ||| ||||          ||||||    
T  28178145 aggaccattgaacaattcttctaaattatccattcctttgagctttagtacaaccaacttggagaagacttttgaaactggagaa---------ttagtg 28178055  T
Q  105 tcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttctcc 204  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||| |||||  |||||||||| ||| |||||||    
T  28178054 tcaatgaggcactgtaattgtgaaatggatctcaaaccaagctcgattagatcattcataccatgatccagaggaacaatctcaggtacgatgtttctcc 28177955  T
Q  205 ctcccccctccattct 220  Q
      |||||||| |||||    
T  28177954 accccccctcgattct 28177939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 28472304 - 28472520
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||      ||| ||    
T  28472304 aaagaggaccgctgaacaattcttccaaattatccattccttcgagctctagtacaaccaacttggagaatacttttgatactagagattcagtatgttt 28472403  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||||||| ||||| |||| |||||||||    |||||   |||||| |||||||||||||||||||| ||||||||||  |||||||| || ||||||    
T  28472404 agtgtcaatgaggcattgtagttgtgaaatactactcaaactaagctcgactagatcattcataccatggtccataggaacaatctcaggcatcatattt 28472503  T
Q  201 ctccctcccccctccat 217  Q
    |||| ||||||||||||    
T  28472504 ctccatcccccctccat 28472520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 11408908 - 11408713
Alignment:
Q  9 ccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttagtgtcaa 108  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||||| |||||||||||||||||||| |   |  |||| |||||||||    
T  11408908 ccattgaacaattcttccaaattatccattccttcaagctttagtacaaccaacttgcagaagacttttgatacttgatatccggtatgcatagtgtcaa 11408809  T
Q  109 taaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttctcc 204  Q
    | ||||| | || |||||||||| |||| || | |||||||||||||||||||||||| ||||| | ||||| ||| |||||||||||||||||||    
T  11408808 tgaggcattttagttgtgaaatgcatcttaaatgaagctcaactagatcattcataccttgatctaaaggaaccatttcaggtatgatatttctcc 11408713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 27962986 - 27962771
Alignment:
Q  5 aggaccattgaacaattcttccaaattatcca--ttccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttag 102  Q
    ||||||||||||||||||||||||||| || |  |||||   ||||||||  || ||||||||||||||||||||| |||||||||      |||||||     
T  27962986 aggaccattgaacaattcttccaaattttctaggttccta--agttctaggccaaccaacttggagaagacttttgttacttgagattcaaaatgcttac 27962889  T
Q  103 tgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttct 202  Q
    ||||||| |||||  ||||||||||| |||||| ||||  |||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  27962888 tgtcaatgaggcaacgtaattgtgaattggatcccaatgaaagctcgactagatcattcataccatgctccataggaacaatctcaggtatgatatttct 27962789  T
Q  203 ccctcccccctccattct 220  Q
    || |||||||||||||||    
T  27962788 ccatcccccctccattct 27962771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28130072 - 28129853
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcga--gttctagtacagccaacttggagaagacttttgatacttgagagatgccatgc 98  Q
    ||||||||||||||||||||||||||||||||||  ||  ||| |  ||||||||||| |||||||||||||||||||||| ||||||||       |||    
T  28130072 aaagaggaccattgaacaattcttccaaattatc--ttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgc 28129975  T
Q  99 ttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatat 198  Q
    ||||||||||| ||||||||||||||||||||||||| |||   ||||||||||| |||||||||||| |||||||| ||||  |||||||||||||| |    
T  28129974 ttagtgtcaatgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgt 28129875  T
Q  199 ttctccctcccccctccattct 220  Q
    || ||| | ||||||| |||||    
T  28129874 ttttccattccccctcgattct 28129853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 27464356 - 27464571
Alignment:
Q  5 aggaccattgaacaattcttccaaattatcca--ttccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttag 102  Q
    ||||||||||||||||||||||||||| || |  ||||   ||  ||||||||| |||||||||||||||| ||||  | ||||||      ||||| ||    
T  27464356 aggaccattgaacaattcttccaaattttctaggttccaaaga--tctagtacaaccaacttggagaagacatttggaaattgagaatcagtatgctgag 27464453  T
Q  103 tgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttct 202  Q
    ||||||| ||||| || || |||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  27464454 tgtcaatgaggcagtgcaactgtgaaatggatatcaaattaagctcgactagatcattcataccatgatccataggaacaatctcaggtatgatgtttct 27464553  T
Q  203 ccctcccccctccattct 220  Q
    || |||||||||||||||    
T  27464554 ccatcccccctccattct 27464571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28144000 - 28143781
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcga--gttctagtacagccaacttggagaagacttttgatacttgagagatgccatgc 98  Q
    |||||||||||||||||||||||||||||||||   ||  ||| |  ||| ||||||| |||||||||||||||||||||| ||||||||       |||    
T  28144000 aaagaggaccattgaacaattcttccaaattatg--ttggttccaaagttttagtacaaccaacttggagaagacttttgacacttgagattcagtgtgc 28143903  T
Q  99 ttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatat 198  Q
    ||||| ||||| ||||||||||||||||||||||||| |||   ||||||||||| |||||||||||| |||||||| ||||  |||||||||||||| |    
T  28143902 ttagtatcaatgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgt 28143803  T
Q  199 ttctccctcccccctccattct 220  Q
    || ||| | ||||||| |||||    
T  28143802 ttttccattccccctcgattct 28143781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 17749365 - 17749537
Alignment:
Q  48 tctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagct 147  Q
    ||||||||| ||||| |||||||||| |||| |||||||||      ||||||||||||||| |||||| | | |||||||||  ||   |||| |||||    
T  17749365 tctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattgaagct 17749464  T
Q  148 caactagatcattcataccatgatccataggaatcatctcaggtatgatatttctccctcccccctccattct 220  Q
    |||||| |||||||||||| |||| ||  ||||  || ||||||||||||||||||| ||||||||| |||||    
T  17749465 caactaaatcattcataccttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattct 17749537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 19050685 - 19050857
Alignment:
Q  48 tctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagct 147  Q
    ||||||||| ||||| |||||||||| |||| |||||||||      ||||||||||||||| |||||| | | |||||||||  ||   |||| |||||    
T  19050685 tctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattgaagct 19050784  T
Q  148 caactagatcattcataccatgatccataggaatcatctcaggtatgatatttctccctcccccctccattct 220  Q
    |||||| |||||||||||| |||| ||  ||||  || ||||||||||||||||||| ||||||||| |||||    
T  19050785 caactaaatcattcataccttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattct 19050857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 26145230 - 26145426
Alignment:
Q  6 ggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgcttagtgt 105  Q
    ||||||||| | ||||||||||||   |||||||  || || | ||||||| ||||||| ||||| ||  ||| |||||||||  |   ||| |||||||    
T  26145230 ggaccattgcataattcttccaaagcttccattctctcaagctttagtacaaccaacttagagaaaacaattggtacttgagaattaatatgtttagtgt 26145329  T
Q  106 caataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttct 202  Q
    | |  |||||||||| |||||||||   |||||  | |||||||| ||||||||||||||| ||||| ||||||| |||||| || |||| ||||||    
T  26145330 ctactaggcactgtagttgtgaaatttctctcagatgaagctcaattagatcattcataccttgatctataggaaccatctcgggcatgagatttct 26145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 28047436 - 28047350
Alignment:
Q  118 gtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttctcc 204  Q
    |||||| ||||| |||| |||| | |||||  ||||||| ||||||||||||||||| |||||  || |||||||||||||||||||    
T  28047436 gtaattttgaaaaggatatcaaattaagcttgactagattattcataccatgatccaaaggaacaatatcaggtatgatatttctcc 28047350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 18081215 - 18081297
Alignment:
Q  6 ggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgaga 88  Q
    ||||||||| | |||||||||||||| |||||| | || || | ||||||| ||||||||||||||||  ||| |||||||||    
T  18081215 ggaccattgcataattcttccaaattttccatttcctcaagatgtagtacaaccaacttggagaagacagttggtacttgaga 18081297  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 27343958 - 27343891
Alignment:
Q  142 caagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttctccctccc 209  Q
    |||| |||| ||||||||||||||||| |||||||||||  ||| |||| |||| |||||||| ||||    
T  27343958 caagatcaattagatcattcataccattatccataggaagaatcccaggcatgagatttctccatccc 27343891  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 27370392 - 27370325
Alignment:
Q  6 ggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagac 73  Q
    ||||||||| | |||||||||||||| | |||| | | ||||| ||||||| ||||||||||||||||    
T  27370392 ggaccattgcataattcttccaaattcttcatttccttgagttttagtacaaccaacttggagaagac 27370325  T

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Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8694675 - 8694894
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||  |||||||| | ||||||||||||||  ||||||| |||||      ||||||    
T  8694675 aaagaggaccattgcacaattcttccaaattatccattcctttgagaactagtacaactaacttggagaagacaattgatacatgagaatcaatatgctt 8694774  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    |||||| |  ||||| |||| |||||||||| |||| || | |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  8694775 agtgtctaagaggcattgtagttgtgaaatgcatcttaaatgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatattt 8694874  T
Q  201 ctccctcccccctccattct 220  Q
    |||| ||||||||| |||||    
T  8694875 ctccatcccccctcgattct 8694894  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26027195 - 26027398
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    ||||||||||||||||||||||||||||||| || |        || |||||||||  ||||||||||||||||||||||||||||||      | ||||    
T  26027195 aaagaggaccattgaacaattcttccaaattttctaggttagaaagatctagtacaatcaacttggagaagacttttgatacttgagattcagtaggctt 26027294  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||| ||| ||| |||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||| |||  |||||||| |||||||||    
T  26027295 agtgttaatgaggtactgtaattgtgaaatggatctcaaagaaagctcgactagatcattcataccatgatccatatgaacaatctcaggcatgatattt 26027394  T
Q  201 ctcc 204  Q
    ||||    
T  26027395 ctcc 26027398  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 9330250 - 9330453
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    ||||||||||||||||||||||||||||||| || | | | |  || ||||||||| |||||||||||||||||||||||||||||||      |||| |    
T  9330250 aaagaggaccattgaacaattcttccaaattttctaattcattaagatctagtacaaccaacttggagaagacttttgatacttgagattcagtatgcgt 9330349  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||||||| ||||| | || |||| ||||| ||||||| | ||||||| | |||||||||||||| ||||||| |||||  |||||||||||||| |||    
T  9330350 agtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagctcagccagatcattcataccttgatccaaaggaacaatctcaggtatgatgttt 9330449  T
Q  201 ctcc 204  Q
    ||||    
T  9330450 ctcc 9330453  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 9384033 - 9384236
Alignment:
Q  1 aaagaggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagacttttgatacttgagagatgccatgctt 100  Q
    ||||||||||||||||||||||||||||||| || | | | |  || ||||||||| |||||||||||||||||||||||||||||||      |||| |    
T  9384033 aaagaggaccattgaacaattcttccaaattttctaattcattaagatctagtacaaccaacttggagaagacttttgatacttgagattcagtatgcgt 9384132  T
Q  101 agtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccataggaatcatctcaggtatgatattt 200  Q
    ||||||||| ||||| | || |||| ||||| ||||||| | ||||||| | |||||||||||||| ||||||| |||||  |||||||||||||| |||    
T  9384133 agtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagctcagccagatcattcataccttgatccaaaggaacaatctcaggtatgatgttt 9384232  T
Q  201 ctcc 204  Q
    ||||    
T  9384233 ctcc 9384236  T

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Target: scaffold0854 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 4387 - 4454
Alignment:
Q  6 ggaccattgaacaattcttccaaattatccattccttcgagttctagtacagccaacttggagaagac 73  Q
    ||||||||| | |||||||||||||| | |||| | | ||||||||||||| ||||||||||||||||    
T  4387 ggaccattgcataattcttccaaattcttcatttccttgagttctagtacaaccaacttggagaagac 4454  T

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Target: scaffold1344 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 640 - 578
Alignment:
Q  147 tcaactagatcattcataccatgatccataggaatcatctcaggtatgatatttctccctccc 209  Q
    |||| ||||||||||||||||| ||| |||||||| ||| |||| |||| |||||||| ||||    
T  640 tcaattagatcattcataccattatctataggaataatcccaggcatgagatttctccatccc 578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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