View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_35 (Length: 240)
Name: NF3728_low_35
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3635733 - 3635512
Alignment:
| Q |
1 |
tctgacacacttgggatcatgtttcagcagacgtgagttctcatctggaataatgtctgcagattctgtaagaaagcttgtctccctgacaagaaacttt |
100 |
Q |
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| T |
3635733 |
tctgacacacttgggatcatgtttcagcagacgtgagttctcatctggaataatgtctgcagattctgtaagaaagcttgtctccctgacaagaaacttt |
3635634 |
T |
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| Q |
101 |
ggaatccgtttttcattgttcaggttcaatgaaggtgaagcnnnnnnngaatcgggcaatgaaggtgaatctaattccttccaagagggagacaaaaatt |
200 |
Q |
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| T |
3635633 |
ggaatccgtttttcattgttcaggttcaatgaaggtgaagctttttttgaatcgggcaatgaaggtgaatctaattccttccaagagggagacaaaaatt |
3635534 |
T |
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| Q |
201 |
aaaaccaaacaagaatatgagc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3635533 |
aaaaccaaacaagaatatgagc |
3635512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 3635808 - 3635727
Alignment:
| Q |
10 |
cttgggatcatgtttcagcagacgtgagttctcatctggaataatgtctgcagattctgtaagaaagcttgtctccctgaca |
91 |
Q |
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|||||| ||||||||||||| || |||| ||||||| |||| ||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
3635808 |
cttggggtcatgtttcagcacacatgagctctcatcaggaacaatatctacagattctgtaagaaagcttgtctctctgaca |
3635727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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