View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3728_low_39 (Length: 235)
Name: NF3728_low_39
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_39 |
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| [»] scaffold0006 (2 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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| [»] scaffold0460 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 208511 - 208657
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
208511 |
gaataatttagattccacaagagatgaaaaaattgatttatattttaatggagatgaatcattcgatcttaacctcgaaggcgagtggaaaatagattga |
208610 |
T |
|
| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgtt |
215 |
Q |
| |
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||||| |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
208611 |
tttaatttttaatgaagatgtataattggaggagaataagaaatgtt |
208657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 170729 - 170875
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| | |
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| T |
170729 |
gaataattttgattttacaagagatgaaaaaattgatttatattttaatggagatgaataatttgatcttaacctcgaaggcgagtggaaaatagattga |
170828 |
T |
|
| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgtt |
215 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
170829 |
tttaatttttaatgaagatgaataattggaggagaataagaaatgtt |
170875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 50564 - 50709
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
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||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
50564 |
gaataattttgattctacaagagatgaaaaaattgatttttattttaatggagatgaatcattcgatcttaacctcgaaggcgagtggaaaatagattga |
50663 |
T |
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| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgt |
214 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
50664 |
tttaatttttaatgaagatgaataattggaggagaataagaaatgt |
50709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 20371410 - 20371555
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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|
| T |
20371410 |
gaataattttgattctacaagagatgaaaaaattgatttttattttaatggagatgaatcattcgatcttaacctcgaaggcgagtggaaaatagattga |
20371509 |
T |
|
| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgt |
214 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
20371510 |
tttaatttttaatgaagatgaataattggaggagaataagaaatgt |
20371555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 20480670 - 20480814
Alignment:
| Q |
70 |
aataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagatttat |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |
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| T |
20480670 |
aataattttgattctacaagagatgaaaaaattgatttatattttaatggagatgaatcattcgatcttaacctc-aaggcgagtggaaaatagattgat |
20480768 |
T |
|
| Q |
170 |
ttaaattttaacgaagatgaataattggaggagaataagaaatgtt |
215 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20480769 |
ttaatttttaatgaagatgaataattggaggagaataagaaatgtt |
20480814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 13673115 - 13673261
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| | |
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| T |
13673115 |
gaataattttgattttacaagagatgaaaaaattgatttatattttaatggagatgaataatttgatcttaacctcgaaggcgagtggaaaatagattga |
13673214 |
T |
|
| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgtt |
215 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
13673215 |
tttaatttttaatgaagatgaataattggaggagaataagaaatgtt |
13673261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 13589713 - 13589823
Alignment:
| Q |
105 |
tttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagatttatttaaattttaacgaagatgaataattggaggagaa |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||| |
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| T |
13589713 |
tttatattttaacggagatgaatcattcgatcttaacctcgaagacgagtggaaaataaattgatttaatttttaatgaagatgaataattggaggagaa |
13589812 |
T |
|
| Q |
205 |
taagaaatgtt |
215 |
Q |
| |
|
||||||||||| |
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| T |
13589813 |
taagaaatgtt |
13589823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 820 - 966
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |
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|
| T |
820 |
gaataattttgattctacaagagatgaaaaaattgattcatattttaatggagatgaatcattcgatcttaacctcgaaggcgagtggaaaattgattga |
919 |
T |
|
| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgtt |
215 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
920 |
tttaatttttaatgaagatgaataattggaggagaataagaaatgtt |
966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 118390 - 118536
Alignment:
| Q |
69 |
gaataatttagattctacaagagatgaaaaatttgatttatattttaatggagatgaatcattcgatcttgacctcgaaggcgagtggaaaatagattta |
168 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| | |
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|
| T |
118390 |
gaataatttagattcaacaagagatgaaaaaattgatttatattttaatggagatgaataattagatcttaacctcgaaggcgagtggaaaatagattga |
118489 |
T |
|
| Q |
169 |
tttaaattttaacgaagatgaataattggaggagaataagaaatgtt |
215 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
118490 |
tttaatttttaatgaagatgaataattggaggagaataagaaatgtt |
118536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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