View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_41 (Length: 229)
Name: NF3728_low_41
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 4133744 - 4133947
Alignment:
| Q |
12 |
gagatgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacac |
111 |
Q |
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| T |
4133744 |
gagatgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacac |
4133843 |
T |
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| Q |
112 |
aatctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctct |
211 |
Q |
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| T |
4133844 |
aatctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctct |
4133943 |
T |
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| Q |
212 |
aact |
215 |
Q |
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|||| |
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| T |
4133944 |
aact |
4133947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 16892058 - 16892254
Alignment:
| Q |
12 |
gagatgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacac |
111 |
Q |
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| T |
16892058 |
gagatgaagaaggtatgggcattcggtgttgttcagttaaagccaggaatattaagattcttctgctggtctaaagactttgatcctcaaaaccagattc |
16892157 |
T |
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| Q |
112 |
aatctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccc |
208 |
Q |
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| T |
16892158 |
agtcacacgcgcagttgtgggtaaggctcataaatctccctcaagaatattggaggaagaccacactatttgaaatcgcatcaggtattggtacccc |
16892254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 19851303 - 19851499
Alignment:
| Q |
12 |
gagatgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacac |
111 |
Q |
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|||||||||| ||| ||||||||||||| ||||||| ||||||||||| | ||| | ||||||||||||||||| || || |||||||| ||||| | | |
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| T |
19851303 |
gagatgaagagggtttgggcgttgggtgttgttcagttgaagcctgggatgctgagattcttttgctggtctaaggattttgatcctcaaaatcagattc |
19851402 |
T |
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| Q |
112 |
aatctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccc |
208 |
Q |
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| T |
19851403 |
aatctcatgctcaattgtgggtaaggtttatgaatctcccccaagaatattggaggaagaccactttatttgaaattgcatcaggaattggtacccc |
19851499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 12581239 - 12581040
Alignment:
| Q |
12 |
gagatgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacac |
111 |
Q |
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|||||||||||||| ||||| ||||||| ||||||| | |||| || | | | ||||| |||| |||||||||||| |||||||| || || | | |
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| T |
12581239 |
gagatgaagaaggtatgggcattgggtgttgttcagttaaagctaggaatattaagattcttctgctcgtctaaagactttgatcctcaaaaccagattc |
12581140 |
T |
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| Q |
112 |
aatctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctct |
211 |
Q |
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| T |
12581139 |
agtcacacgtgcagttgtgggtaaggctcatgaatccccctcaagaatattggaggaagaccacactatttgaaatcgcatccggtattggtacccctct |
12581040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 37048787 - 37048831
Alignment:
| Q |
48 |
ctgaagcctgggctcctgcgtttcttttgctggtctaaagacttc |
92 |
Q |
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| T |
37048787 |
ctgaagcctgggtttctgcgtttcttttgctggactaaagccttc |
37048831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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