View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_6 (Length: 643)

Name: NF3728_low_6
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_6
NF3728_low_6
[»] chr2 (7 HSPs)
chr2 (6-630)||(43867163-43867787)
chr2 (153-633)||(43863685-43864149)
chr2 (112-633)||(43874841-43875357)
chr2 (160-263)||(38989109-38989212)
chr2 (474-528)||(38989423-38989477)
chr2 (571-617)||(38989526-38989572)
chr2 (40-89)||(43875362-43875411)
[»] chr3 (14 HSPs)
chr3 (180-632)||(777818-778270)
chr3 (177-287)||(480963-481073)
chr3 (136-287)||(476010-476161)
chr3 (160-269)||(1304691-1304800)
chr3 (177-269)||(1186243-1186335)
chr3 (177-269)||(1204307-1204399)
chr3 (204-267)||(5361014-5361077)
chr3 (139-217)||(2996512-2996590)
chr3 (475-527)||(1186544-1186596)
chr3 (475-527)||(1204608-1204660)
chr3 (475-527)||(1304430-1304482)
chr3 (181-245)||(4149603-4149667)
chr3 (181-245)||(4165375-4165439)
chr3 (202-274)||(7125963-7126035)
[»] chr4 (4 HSPs)
chr4 (118-528)||(52186780-52187191)
chr4 (151-230)||(15527301-15527380)
chr4 (571-608)||(52187240-52187277)
chr4 (190-230)||(35968336-35968376)
[»] scaffold0438 (1 HSPs)
scaffold0438 (160-266)||(5312-5418)
[»] chr5 (3 HSPs)
chr5 (181-266)||(33958061-33958146)
chr5 (159-244)||(19658349-19658434)
chr5 (159-244)||(19675188-19675273)
[»] chr7 (2 HSPs)
chr7 (177-253)||(32413636-32413712)
chr7 (201-274)||(6889182-6889255)
[»] chr6 (6 HSPs)
chr6 (180-253)||(7115536-7115609)
chr6 (180-253)||(7120608-7120681)
chr6 (180-253)||(7124012-7124085)
chr6 (201-253)||(7140726-7140778)
chr6 (484-524)||(7175105-7175145)
chr6 (201-253)||(8680340-8680392)
[»] scaffold0896 (1 HSPs)
scaffold0896 (180-253)||(2255-2328)
[»] chr1 (1 HSPs)
chr1 (199-231)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 6 - 630
Target Start/End: Complemental strand, 43867787 - 43867163
Alignment:
Q  6 ttcacttccctccacatgcctaataacaataaacacttgtcccatttgcttgtagaagtgtttgtttacgagacaatggtgagaggtagcctacgtagca 105  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  43867787 ttcatttccctccacatgcctaacaacaacaaacacttgtcccatttgcttgtagaagtttttgtttacgagacaatggtgagacgaagcctacgtagca 43867688  T
Q  106 ggaaacataagcacaacgaaaacgaagacattatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  43867687 ggaaacataagcacaacgaaaacgaagacattatcagtaacttgactgattgtattctcattcacgtactgtcctttttgaacgcaaaagaggccgctca 43867588  T
Q  206 aacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcgaactttaagaccgagaaaagtttagccgaa 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43867587 aacttgcattttgtccaaaagatggatcactctctggaagggtcttcctactattacattaagttcttcgaactttaggaccgagaaaagtttagccgaa 43867488  T
Q  306 ttcctgtctcactttttatctcttcgcgatggctcaactactatacacactctcgatgtttactgcccatattgcttggagccaagcctattctaactga 405  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| ||||| ||| || |||    
T  43867487 ttcctgtctcactttttatctcttcgcgatggctcaaccactatacacactctcgatgttcactgcctatattacttggagcctagcctgttccaaatga 43867388  T
Q  406 ttataaaatacactatttcatacaatgtccaacacttgctaatgaatttcccttgtcgtattgacctctttccctcttgcttcttttcatgtcacacatt 505  Q
    ||||||||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43867387 ttataaaatacgctatttcccacaatgtccaacacttactaatgaatttcccttgtcgtattgacctctttccctcttgcttcttttcgtgtcacacatt 43867288  T
Q  506 aacgtctcttaatctttctggttacaatatattgtttggtcagataccaatatttccnnnnnnnttgaatttgccagcattaaccagcttgtctttaaag 605  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       || ||| |||||||||||||||||||||||||||||    
T  43867287 aacgtctcttaatctttctggttacgatatattgtttggtcagataccaatatttccaaaaaatttaaatctgccagcattaaccagcttgtctttaaag 43867188  T
Q  606 tacctttcctttcatcgcagtgatg 630  Q
    ||| |||||||||||||||||||||    
T  43867187 tacttttcctttcatcgcagtgatg 43867163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 153 - 633
Target Start/End: Complemental strand, 43864149 - 43863685
Alignment:
Q  153 gattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttc 252  Q
    |||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  43864149 gattgtattctcattcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttc 43864050  T
Q  253 ctacta-ttacattaagttcttcgaactttaagaccgagaaaagtttagccgaattcctgtctcactttttatctcttcgcgatggctcaactactatac 351  Q
    |||||| |||||||||||||||| ||||||| |||| || ||||||||  |||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  43864049 ctactaattacattaagttcttcaaactttaggaccaaggaaagtttaagcgaatttctgtctcaatttttatctcttcgcgatggctcaaccactatac 43863950  T
Q  352 acactctcgatgtttactgcccatattgcttggagccaagcctattctaactgattataaaatacactatttcatacaatgtccaacacttgctaatgaa 451  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||  ||||||            |||||| ||||||||    
T  43863949 acactctcgatgtttactgcccatattccttggagccaagcctattcaaaatgattataaaatacgttatttc------------acacttactaatgaa 43863862  T
Q  452 tttcccttgtcgtattgacctctttccctcttgcttcttttcatgtcacacattaac-gtctcttaatctttctggttacaatatattgtttggtcagat 550  Q
    ||||||||||  |      ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  43863861 tttcccttgtttt------ctctttccctcttccttcttttcatgtcacacattaacggtctctttatctttctggttacgatatattgtttggtcagat 43863768  T
Q  551 accaatatttccnnnnnnnttgaatttgccagcattaaccagcttgtctttaaagtacctttcctttcatcgcagtgatgatg 633  Q
    ||||||||||||       |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43863767 accaatatttccaaaacatttgaatttgccagcattaaccaccttgtctttaaagtacttttcctttcatcgcagtgatgatg 43863685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 112 - 633
Target Start/End: Complemental strand, 43875357 - 43874841
Alignment:
Q  112 ataagcacaacgaaaacgaagacattatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttg 211  Q
    ||||| ||||| |||| |||||||||||||||||||| |  |||||||||||||||||| || |||||||||| || |||||||||| ||||||||||||    
T  43875357 ataaggacaacaaaaatgaagacattatcagtaacttgatcgattgtattctcattcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttg 43875258  T
Q  212 cattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcgaactttaagaccgagaaaagtttagccgaattcctg 311  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||| |||||||| |||| |   |||||| |||| || ||| |||    | |||||||    
T  43875257 cattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcat---actttaggaccaaggaaactttcagtgtattcctg 43875161  T
Q  312 tctcactttttatctcttcgcgatggctcaactactatacacactctcgatgtttactgcccatattgcttggagccaagcctattctaactgattataa 411  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||  |||||| |||||| ||||| | | ||||||||  ||||| || | |||||||    
T  43875160 tctcaatttttatctctttgcgatggctcaaccactatacacactc--gatgttgactgccgatattacattgagccaagtatattccaaattattataa 43875063  T
Q  412 aatacactatttcatacaatgtccaacacttgctaatgaatttcccttgtcgtattgacctctttccctcttgcttcttttcatgtcacacattaacgtc 511  Q
    ||||  ||||  || ||||| |||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43875062 aatatgctatcacacacaatatccaacacttactaatggatatcccttgttgtattgacctctttccctcttgcttcttttcatgtcacacattaacttc 43874963  T
Q  512 tcttaatctttctggttacaatatattgtttggtcagataccaatatttccnnnnnnnttgaatttgccagcattaaccagcttgtctttaaagtacctt 611  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||||||       |||||||||||| |||||||||||||||||||||||||| ||    
T  43874962 tcttaatctttctggttacgatatattgtttggtcggatacaaatatttccaaaaaaattgaatttgccaacattaaccagcttgtctttaaagtacatt 43874863  T
Q  612 tcctttcatcgcagtgatgatg 633  Q
     |||| ||| | ||||||||||    
T  43874862 gccttgcattgaagtgatgatg 43874841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 38989109 - 38989212
Alignment:
Q  160 ttctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactat 259  Q
    ||||| ||||| || |||||||| | ||||||| | |||| |||||||| ||| ||||||||||||||||||||| |||||||||| ||||| | |||||    
T  38989109 ttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattctctggaagagtctttccactat 38989208  T
Q  260 taca 263  Q
    ||||    
T  38989209 taca 38989212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 38989423 - 38989477
Alignment:
Q  474 tttccctcttgcttcttttcatgtcacacattaacgtctcttaatctttctggtt 528  Q
    ||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  38989423 tttccgtcttgcctcttttcatgtcacactttaaagtctcttaatctttctggtt 38989477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 617
Target Start/End: Original strand, 38989526 - 38989572
Alignment:
Q  571 tgaatttgccagcattaaccagcttgtctttaaagtacctttccttt 617  Q
    ||||||||||| ||||||||| |||||||||||||||| || |||||    
T  38989526 tgaatttgccatcattaaccaacttgtctttaaagtactttgccttt 38989572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 43875411 - 43875362
Alignment:
Q  40 acttgtcccatttgcttgtagaagtgtttgtttacgagacaatggtgaga 89  Q
    |||||| |||||||||||||||| ||||||||||| |||  |||||||||    
T  43875411 acttgttccatttgcttgtagaattgtttgtttacaagaatatggtgaga 43875362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 180 - 632
Target Start/End: Complemental strand, 778270 - 777818
Alignment:
Q  180 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcgaact 279  Q
    |||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||   ||| || ||| ||||||||||||||||  |||    
T  778270 tttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacact 778171  T
Q  280 ttaagaccgagaaaagtttagccgaattcctgtctcactttttatctcttcgcgatggctcaactactatacacactctcgatgtttactgcccatattg 379  Q
    |||  |||    | ||||| |  |||||| | |||||  |||| |||||||| ||||||||||  ||||| |    ||| ||  || |  ||   |||||    
T  778170 ttagaacctccgacagttttgaagaattcgtttctcagattttgtctcttcgtgatggctcaatcactatccgtgttcttgactttcagcgcaattattg 778071  T
Q  380 cttggagccaagcctattctaactgattataaaatacactatttcatacaatgtccaacacttgctaatgaatttcccttgtcgtattgacctctttccc 479  Q
      ||||||  |||||| || ||  |||||| ||||||  | ||||| |||||||||| |||||| ||||| ||||||| |||  |||| | |  |||||     
T  778070 tatggagcatagcctactccaaaggattattaaatacgttgtttcacacaatgtccagcacttgataatggatttcccctgtgatattaatcattttcca 777971  T
Q  480 tcttgcttcttttcatgtcacacattaacgtctcttaatctttctggttacaatatattgtttggtcagataccaatatttccnnnnnnnttgaatttgc 579  Q
    || ||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||||||| | ||  ||||||||       |||||||| |    
T  777970 tcatgcttcttttcatgtcaaactttaacgtctcttaatctttctggtttccatatattgtttggtcacaaactcatatttccaaattttttgaatttac 777871  T
Q  580 cagcattaaccagcttgtctttaaagtacctttcctttcatcgcagtgatgat 632  Q
    |||||||||| ||||||||| | |||||  || ||||||| ||| ||||||||    
T  777870 cagcattaacaagcttgtctctgaagtattttgcctttcagcgcggtgatgat 777818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 480963 - 481073
Alignment:
Q  177 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcga 276  Q
    |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||  |||||| ||  |||| ||||||||||| |    
T  480963 tcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaa 481062  T
Q  277 actttaagacc 287  Q
    |||||| ||||    
T  481063 actttaggacc 481073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 136 - 287
Target Start/End: Original strand, 476010 - 476161
Alignment:
Q  136 ttatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaa 235  Q
    |||||||| | ||| | |||||||||||| |||||  | | |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||    
T  476010 ttatcagtgatttatcagattgtattctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaa 476109  T
Q  236 tctctggaagggtcttcctactattacattaagttcttcgaactttaagacc 287  Q
    |||||||||   |||||| ||  ||||| |||||||||| ||||||| ||||    
T  476110 tctctggaatactcttcccacccttacactaagttcttcaaactttaggacc 476161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 1304800 - 1304691
Alignment:
Q  160 ttctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactat 259  Q
    |||||| |||| || | ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| | ||| |    
T  1304800 ttctcaatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1304701  T
Q  260 tacattaagt 269  Q
    ||||||||||    
T  1304700 tacattaagt 1304691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 1186243 - 1186335
Alignment:
Q  177 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagt 269  Q
    ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| | ||| |||||||||||    
T  1186243 tcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacattaagt 1186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 1204307 - 1204399
Alignment:
Q  177 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagt 269  Q
    ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| | ||| |||||||||||    
T  1204307 tcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacattaagt 1204399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 5361077 - 5361014
Alignment:
Q  204 caaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaa 267  Q
    |||||||||||||| ||||||||||||| |||||||||||||  |||||| ||| || ||||||    
T  5361077 caaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcattaa 5361014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 2996590 - 2996512
Alignment:
Q  139 tcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcatttt 217  Q
    ||||| |||||||||||||| || || ||||| || | || ||||||||| ||||||| || |||||||||||||||||    
T  2996590 tcagtgacttaactgattgtgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcatttt 2996512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 1186544 - 1186596
Alignment:
Q  475 ttccctcttgcttcttttcatgtcacacattaacgtctcttaatctttctggt 527  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||| |||||    
T  1186544 ttccctcctgtttcttttcatctcacactttaacgtctcttaatcttactggt 1186596  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 1204608 - 1204660
Alignment:
Q  475 ttccctcttgcttcttttcatgtcacacattaacgtctcttaatctttctggt 527  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||| |||||    
T  1204608 ttccctcctgtttcttttcatctcacactttaacgtctcttaatcttactggt 1204660  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 1304482 - 1304430
Alignment:
Q  475 ttccctcttgcttcttttcatgtcacacattaacgtctcttaatctttctggt 527  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||| |||||    
T  1304482 ttccctcctgtttcttttcatctcacactttaacgtctcttaatcttactggt 1304430  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 4149603 - 4149667
Alignment:
Q  181 ttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaag 245  Q
    |||||||| | ||||||||||||||||| ||| |||||||||  |||||||  ||||||||||||    
T  4149603 ttttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctggaag 4149667  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 4165375 - 4165439
Alignment:
Q  181 ttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaag 245  Q
    |||||||| | ||||||||||||||||| ||| |||||||||  |||||||  ||||||||||||    
T  4165375 ttttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctggaag 4165439  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 7125963 - 7126035
Alignment:
Q  202 ttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttc 274  Q
    |||||||||| || ||||||||||||||||  |||||||||||  ||||||| ||  ||||||||| ||||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttc 7126035  T

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Target: chr4 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 118 - 528
Target Start/End: Original strand, 52186780 - 52187191
Alignment:
Q  118 acaacgaaaacgaagacattatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcatttt 217  Q
    ||||| |||| ||||||||||||||| |||| ||||||| | ||||| | ||| || | |||||| ||||||||||| ||||||||||||| ||||||||    
T  52186780 acaacaaaaatgaagacattatcagtgacttgactgattctgttctcctccacctactctcctttctgaacgcaaaacaggccgttcaaacctgcatttt 52186879  T
Q  218 gtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcgaactttaagaccg--agaaaagtttagccgaattcctgtctc 315  Q
    ||||||||||||||||| |||||||| | ||||||| ||| ||||| ||||||||||  |||||| | |||  | |||||||| |  |||||  ||||||    
T  52186880 gtccaaaagatggatcattctctggaggagtcttcccactcttacactaagttcttcatactttaggtccggaaaaaaagttt-gatgaatttgtgtctc 52186978  T
Q  316 actttttatctcttcgcgatggctcaactactatacacactctcgatgtttactgcccatattgcttggagccaagcctattctaactgattataaaata 415  Q
    |  || | |||||||| |||||||||||  | || |||||||| ||| | ||  | |   | | | || |||| | |||| ||  |  ||| ||| ||||    
T  52186979 agattctctctcttcgtgatggctcaaccgccatccacactcttgatttgtatcgtcgtcagtacatgaagcctaccctactcccaaggatcatagaata 52187078  T
Q  416 cactatttcatacaatgtccaacacttgctaatgaatttcccttgtcgtattgacctctttccctcttgcttcttttcatgtcacacattaacgtctctt 515  Q
    |||| ||||| ||||||||||||||||  || |  ||| | |||||| ||||||   |||||| |||||| |||||||||||| ||| ||||||||||||    
T  52187079 cactgtttcacacaatgtccaacacttaatacttgattacacttgtcatattgaagactttccttcttgcatcttttcatgtcgcactttaacgtctctt 52187178  T
Q  516 aatctttctggtt 528  Q
    |||||||||||||    
T  52187179 aatctttctggtt 52187191  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 15527380 - 15527301
Alignment:
Q  151 ctgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatgg 230  Q
    ||||||| ||| |||||||| | ||||| ||||||| | | ||||| || |||| |||||||||| ||||||||||||||    
T  15527380 ctgattgcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgg 15527301  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 52187240 - 52187277
Alignment:
Q  571 tgaatttgccagcattaaccagcttgtctttaaagtac 608  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  52187240 tgaatttgccagcattaaccaacttgtctctaaagtac 52187277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 35968336 - 35968376
Alignment:
Q  190 caaaagaggccgttcaaacttgcattttgtccaaaagatgg 230  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  35968336 caaaacaggtcgttcaaacttgcgttttgtccaaaagatgg 35968376  T

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Target: scaffold0438 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 5312 - 5418
Alignment:
Q  160 ttctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactat 259  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||  |||||| ||| |    
T  5312 ttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatggatcaatctctggaagactcttcccactct 5411  T
Q  260 tacatta 266  Q
    |||||||    
T  5412 tacatta 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 33958146 - 33958061
Alignment:
Q  181 ttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacatta 266  Q
    |||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||  ||| ||||||||    
T  33958146 ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta 33958061  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 19658434 - 19658349
Alignment:
Q  159 attctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaa 244  Q
    |||||| ||||| | ||||| |||||| |||||||| | ||||||||||||||  |||||||||  |||||||  |||||||||||    
T  19658434 attctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19658349  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 19675273 - 19675188
Alignment:
Q  159 attctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaa 244  Q
    |||||| ||||| | ||||| |||||| |||||||| | ||||||||||||||  |||||||||  |||||||  |||||||||||    
T  19675273 attctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19675188  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 32413636 - 32413712
Alignment:
Q  177 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    |||| ||||||| | ||| | ||||||||||||||||||||||||| ||||||||  |||||||||||| |||||||    
T  32413636 tcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 6889182 - 6889255
Alignment:
Q  201 gttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttc 274  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||   |||||||||  ||| ||||||||||||    
T  6889182 gttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacccttatattaagttcttc 6889255  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 7115609 - 7115536
Alignment:
Q  180 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    ||||||||| | ||| | || |||||||||||  ||||||||||||||||||  |||||||||||| |||||||    
T  7115609 tttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 7120681 - 7120608
Alignment:
Q  180 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    ||||||||| | ||| | || |||||||||||  ||||||||||||||||||  |||||||||||| |||||||    
T  7120681 tttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 7124085 - 7124012
Alignment:
Q  180 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    ||||||||| | ||| | || |||||||||||  ||||||||||||||||||  |||||||||||| |||||||    
T  7124085 tttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 7140778 - 7140726
Alignment:
Q  201 gttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    ||||||||||| |||||||||||||||||||  ||| | |||||| |||||||    
T  7140778 gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc 7140726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 524
Target Start/End: Complemental strand, 7175145 - 7175105
Alignment:
Q  484 gcttcttttcatgtcacacattaacgtctcttaatctttct 524  Q
    ||||||||||||||||||| ||||| |||||||| ||||||    
T  7175145 gcttcttttcatgtcacactttaacatctcttaacctttct 7175105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 8680392 - 8680340
Alignment:
Q  201 gttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    ||||||||||| |||||||||||||||||||  ||| | |||||| |||||||    
T  8680392 gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc 8680340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 2255 - 2328
Alignment:
Q  180 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 253  Q
    ||||||||| | ||| | || |||||||||||  ||||| ||||||||||||  |||||||||||| |||||||    
T  2255 tttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagtgtcttcc 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 42602935 - 42602903
Alignment:
Q  199 ccgttcaaacttgcattttgtccaaaagatgga 231  Q
    |||||||||||||||| ||||||||||||||||    
T  42602935 ccgttcaaacttgcatcttgtccaaaagatgga 42602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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