View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3728_low_7 (Length: 632)

Name: NF3728_low_7
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3728_low_7
NF3728_low_7
[»] chr5 (6 HSPs)
chr5 (26-406)||(38602967-38603352)
chr5 (408-618)||(38603443-38603653)
chr5 (69-406)||(39050964-39051282)
chr5 (408-618)||(39051372-39051576)
chr5 (520-618)||(5163873-5163974)
chr5 (568-618)||(8359267-8359317)
[»] chr2 (5 HSPs)
chr2 (69-406)||(38593537-38593858)
chr2 (69-406)||(38597133-38597454)
chr2 (408-618)||(38593243-38593447)
chr2 (408-618)||(38596839-38597043)
chr2 (520-617)||(10330910-10331012)
[»] chr6 (2 HSPs)
chr6 (69-406)||(13561785-13562103)
chr6 (408-618)||(13561491-13561695)
[»] scaffold0013 (3 HSPs)
scaffold0013 (520-618)||(24806-24908)
scaffold0013 (520-618)||(28045-28148)
scaffold0013 (520-614)||(32318-32416)
[»] chr1 (3 HSPs)
chr1 (513-617)||(18655661-18655769)
chr1 (518-618)||(18656496-18656602)
chr1 (568-617)||(9850174-9850223)
[»] chr7 (8 HSPs)
chr7 (514-617)||(40321283-40321390)
chr7 (520-618)||(29103112-29103215)
chr7 (514-617)||(35044834-35044941)
chr7 (514-618)||(42520434-42520535)
chr7 (518-618)||(35045692-35045797)
chr7 (561-616)||(36584064-36584119)
chr7 (518-618)||(40322029-40322138)
chr7 (568-618)||(43703266-43703316)
[»] chr4 (2 HSPs)
chr4 (520-618)||(31205510-31205612)
chr4 (568-617)||(54823120-54823169)
[»] chr3 (4 HSPs)
chr3 (520-617)||(55387447-55387548)
chr3 (520-603)||(50003030-50003117)
chr3 (520-618)||(50002626-50002728)
chr3 (568-618)||(55386648-55386698)
[»] chr8 (4 HSPs)
chr8 (520-618)||(41766966-41767067)
chr8 (520-559)||(41766406-41766445)
chr8 (568-618)||(43414804-43414854)
chr8 (520-603)||(43415769-43415856)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 26 - 406
Target Start/End: Original strand, 38602967 - 38603352
Alignment:
Q  26 cccatcactgtgattttcattcgtttgtgaacttagcagtcagcactgtgatcctgacccattcatagtttctctcaattctccgtttttgtttcgaagt 125  Q
    |||||||||||||||  | |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  38602967 cccatcactgtgattcccgttcgtttgcgaacttagcagtcaacactgtgatcctgacccattcatggtttctctcaattcttcgtttttgtttcgaagt 38603066  T
Q  126 tcgaacccacccaatctgtttgcgacccaccatttcaaacccgtccattatgtctgaagccattgatttctctcttaattcggtaaatgaatcataaaac 225  Q
    ||||||||||||  ||||||||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||||||| | ||||||| ||  |||||    
T  38603067 tcgaacccaccccttctgtttgcgacccaccgtttcaaagtcgtccattctgtccgaagccattgatttctctcttaatttgctaaatgagtcgcaaaac 38603166  T
Q  226 tcatttgatatattgtacaattttgactctatctctaaattttacctaagttcattttgatggaatgtgggttgtcttcga---------nnnnnnnnna 316  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                  |    
T  38603167 tcatttgatatattgtttaattttgactctatctctaaattttacctaagttcattttgatgaaatgtgggttgtcttcgatatttttttttttttttta 38603266  T
Q  317 ctttgtacgattttctatgtttgtatagctgaaaatctatgtgatgatttggagatgataaattataaagtttaattagttttcatttca 406  Q
    ||||||| |||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  38603267 ctttgtatgattttcta----tgtatagctgaaaatctatgtgataatttggagatgataaattataaagtttatttatttttcatttca 38603352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 408 - 618
Target Start/End: Original strand, 38603443 - 38603653
Alignment:
Q  408 taggtagtttggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcattcgaatctcaagcacgcaatcaccatcgggt 507  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  38603443 taggtagtttggtacttgtgagttgtagagaaataagattattgatgatgattttaatgttaacctcatccgaatctcacgcacgcaatcaccatcgggt 38603542  T
Q  508 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagatttttgtttctgattcatgaatgttgatgagagttatatgaagaagatggaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  38603543 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagattttggtttctgattcatgaatattgatgatagttatatgaagaagatggaga 38603642  T
Q  608 tgaggaagaag 618  Q
    |||||||||||    
T  38603643 tgaggaagaag 38603653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 69 - 406
Target Start/End: Original strand, 39050964 - 39051282
Alignment:
Q  69 cactgtgatcctgacccattcatagtttctctcaattctccgtttttgtttcgaagttcgaacccacccaatctgtttgcgacccaccatttcaaacccg 168  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||    
T  39050964 cactgtgatcctgacccattcatggtttctctcaattctccgtttttgtttagaagttcgaacccacccattctgcttgcgacccaccgtttcaaacccg 39051063  T
Q  169 tccattatgtctgaagccattgatttctctcttaattcggtaaatgaatcataaaactcatttgatatattgtacaattttgactctatctctaaatttt 268  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||| ||  ||||||||||| |                    |||||||||||||||    
T  39051064 tccattctgtccgaagccattgatttctctcttaatttggtaaatgagtcgcaaaactcatttaa--------------------ctatctctaaatttt 39051143  T
Q  269 acctaagttcattttgatggaatgtgggttgtcttcga-nnnnnnnnnactttgtacgattttctatgtttgtatagctgaaaatctatgtgatgatttg 367  Q
    ||| ||||||||||||||| ||||||||||||||||||          |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  39051144 acccaagttcattttgatgaaatgtgggttgtcttcgattttttttttactttgtatgattttctatgtttgtataactgaaaatctatgtgatgatttg 39051243  T
Q  368 gagatgataaattataaagtttaattagttttcatttca 406  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  39051244 gagatgataaattataaaatttaattatttttcatttca 39051282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 408 - 618
Target Start/End: Original strand, 39051372 - 39051576
Alignment:
Q  408 taggtagtttggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcattcgaatctcaagcacgcaatcaccatcgggt 507  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  39051372 taggtagtttggtacttgtgagctgtagagaagtaagattattgatgatgtttttaatgttaacctcatccgaatctcacgcacgcaatcaccatcgggt 39051471  T
Q  508 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagatttttgtttctgattcatgaatgttgatgagagttatatgaagaagatggaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||      ||||||||||||||||||||||    
T  39051472 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagattttggtttttgattcatgaatgtt------agttatatgaagaagatggaga 39051565  T
Q  608 tgaggaagaag 618  Q
    |||| ||||||    
T  39051566 tgagaaagaag 39051576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 618
Target Start/End: Complemental strand, 5163974 - 5163873
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagatttttgt----ttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaag 615  Q
    ||||||||||| |||||| ||| ||||||||| ||||||| |    |||||||||||||| ||||||||  |||| |||| ||||||| |||||||||||    
T  5163974 ttttgtgtttgttagttgctgg-tttgattcatgatttttctggatttctgattcatgaaagttgatgatggttacatgaggaagatgaagatgaggaag 5163876  T
Q  616 aag 618  Q
    |||    
T  5163875 aag 5163873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 8359267 - 8359317
Alignment:
Q  568 ttcatgaatgttgatgagagttatatgaagaagatggagatgaggaagaag 618  Q
    |||||||||||||||||  ||| ||||||||||||| |||||| |||||||    
T  8359267 ttcatgaatgttgatgatggttttatgaagaagatgaagatgaagaagaag 8359317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 6e-88; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 69 - 406
Target Start/End: Complemental strand, 38593858 - 38593537
Alignment:
Q  69 cactgtgatcctgacccattcatagtttctctcaattctccgtttttgtttcgaagttcgaacccacccaatctgtttgcgacccaccatttcaaacccg 168  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38593858 cactgtgatcctgacccatttatggtttctctcaattctccgtttttgtttcgaagttcgaacccacccattctgtttgcgacccaccgtttcaaacccg 38593759  T
Q  169 tccattatgtctgaagccattgatttctctcttaattcggtaaatgaatcataaaactcatttgatatattgtacaattttgactctatctctaaatttt 268  Q
    |||||| |||| ||||| ||||||||||||| ||||||||||||||| ||  |||||||||||||                    |||||||||||||||    
T  38593758 tccattctgtccgaagctattgatttctctcataattcggtaaatgagtcgcaaaactcatttga--------------------ctatctctaaatttt 38593679  T
Q  269 acctaagttcattttgatggaatgtgggttgtcttcga----nnnnnnnnnactttgtacgattttctatgtttgtatagctgaaaatctatgtgatgat 364  Q
    ||||||||||||||||||| ||||||||||||||||||             |||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  38593678 acctaagttcattttgatgaaatgtgggttgtcttcgatttttttttttttactttgtatgattttctatgtttgtataactgaaaatatatgtgatgat 38593579  T
Q  365 ttggagatgataaattataaagtttaattagttttcatttca 406  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  38593578 ttggagatgataaattataaaatttaattatttttcatttca 38593537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 69 - 406
Target Start/End: Complemental strand, 38597454 - 38597133
Alignment:
Q  69 cactgtgatcctgacccattcatagtttctctcaattctccgtttttgtttcgaagttcgaacccacccaatctgtttgcgacccaccatttcaaacccg 168  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38597454 cactgtgatcctgacccatttatggtttctctcaattctccgtttttgtttcgaagttcgaacccacccattctgtttgcgacccaccgtttcaaacccg 38597355  T
Q  169 tccattatgtctgaagccattgatttctctcttaattcggtaaatgaatcataaaactcatttgatatattgtacaattttgactctatctctaaatttt 268  Q
    |||||| |||| ||||| ||||||||||||| ||||||||||||||| ||  |||||||||||||                    |||||||||||||||    
T  38597354 tccattctgtccgaagctattgatttctctcataattcggtaaatgagtcgcaaaactcatttga--------------------ctatctctaaatttt 38597275  T
Q  269 acctaagttcattttgatggaatgtgggttgtcttcga----nnnnnnnnnactttgtacgattttctatgtttgtatagctgaaaatctatgtgatgat 364  Q
    ||||||||||||||||||| ||||||||||||||||||             |||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  38597274 acctaagttcattttgatgaaatgtgggttgtcttcgatttttttttttttactttgtatgattttctatgtttgtataactgaaaatatatgtgatgat 38597175  T
Q  365 ttggagatgataaattataaagtttaattagttttcatttca 406  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  38597174 ttggagatgataaattataaaatttaattatttttcatttca 38597133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 408 - 618
Target Start/End: Complemental strand, 38593447 - 38593243
Alignment:
Q  408 taggtagtttggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcattcgaatctcaagcacgcaatcaccatcgggt 507  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||  |||    
T  38593447 taggtagttaggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcatccgaatctcacggacgcaatcaccataaggt 38593348  T
Q  508 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagatttttgtttctgattcatgaatgttgatgagagttatatgaagaagatggaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||||||||||||||||||||||    
T  38593347 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagattttggtttctgattcatgaatgtt------agttatatgaagaagatggaga 38593254  T
Q  608 tgaggaagaag 618  Q
    || | ||||||    
T  38593253 tgggaaagaag 38593243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 408 - 618
Target Start/End: Complemental strand, 38597043 - 38596839
Alignment:
Q  408 taggtagtttggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcattcgaatctcaagcacgcaatcaccatcgggt 507  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||  |||    
T  38597043 taggtagttaggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcatccgaatctcacggacgcaatcaccataaggt 38596944  T
Q  508 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagatttttgtttctgattcatgaatgttgatgagagttatatgaagaagatggaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||||||||||||||||||||||    
T  38596943 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagattttggtttctgattcatgaatgtt------agttatatgaagaagatggaga 38596850  T
Q  608 tgaggaagaag 618  Q
    || | ||||||    
T  38596849 tgggaaagaag 38596839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 520 - 617
Target Start/End: Complemental strand, 10331012 - 10330910
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt-----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaa 614  Q
    ||||||||||| ||||||||||||||||||||  |||||      ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  10331012 ttttgtgtttgttagttgttgggtttgattcataattttatttgggtttctgattcatgaatgttgatgatagttatatgaagaagatgaagaagaggaa 10330913  T
Q  615 gaa 617  Q
    |||    
T  10330912 gaa 10330910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 69 - 406
Target Start/End: Complemental strand, 13562103 - 13561785
Alignment:
Q  69 cactgtgatcctgacccattcatagtttctctcaattctccgtttttgtttcgaagttcgaacccacccaatctgtttgcgacccaccatttcaaacccg 168  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||    
T  13562103 cactgtgatcctgacccattcatggtttctctcaattctccctttttgtttcgaagtctgaacccacccattctgtttgcgacccaccgtttcaaacccg 13562004  T
Q  169 tccattatgtctgaagccattgatttctctcttaattcggtaaatgaatcataaaactcatttgatatattgtacaattttgactctatctctaaatttt 268  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||||| ||  ||||||||| |||                    |||||||||||||||    
T  13562003 tccattctgtccgaagccattaatttctctcttaattcggtaaatgagtcgcaaaactcatctga--------------------ctatctctaaatttt 13561924  T
Q  269 acctaagttcattttgatggaatgtgggttgtcttcga-nnnnnnnnnactttgtacgattttctatgtttgtatagctgaaaatctatgtgatgatttg 367  Q
    ||| ||||||||||||||| ||||||||||||||||||          |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  13561923 acccaagttcattttgatgaaatgtgggttgtcttcgattttttttttactttgtatgattttctatgtttgtataactgaaaatctatgtgatgatttg 13561824  T
Q  368 gagatgataaattataaagtttaattagttttcatttca 406  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  13561823 gagatgataaattataaaatttaattatttttcatttca 13561785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 408 - 618
Target Start/End: Complemental strand, 13561695 - 13561491
Alignment:
Q  408 taggtagtttggtacttgtgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcattcgaatctcaagcacgcaatcaccatcgggt 507  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||     
T  13561695 taggtagtttggtacttttgagttgtagagaagtaagattattgatgatgtttttaatgttaacctcatccgaatctcacgcacgcaatcaccatcgggc 13561596  T
Q  508 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagatttttgtttctgattcatgaatgttgatgagagttatatgaagaagatggaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||      ||||||||||||||||||||||    
T  13561595 agcgaagtttgattttgtgtttgctagttgttgggtttgattcaagattttggtttttgattcatgaatgtt------agttatatgaagaagatggaga 13561502  T
Q  608 tgaggaagaag 618  Q
    |||| ||||||    
T  13561501 tgagaaagaag 13561491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 618
Target Start/End: Complemental strand, 24908 - 24806
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaag 615  Q
    ||||||||||| |||||| ||||||||||||| |||||||    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  24908 ttttgtgtttgttagttgctgggtttgattcatgatttttttcggtttctgattcatgaatgttgatgatggttatatgaagaagatgaagatgaggaag 24809  T
Q  616 aag 618  Q
    |||    
T  24808 aag 24806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 520 - 618
Target Start/End: Complemental strand, 28148 - 28045
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt-----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaa 614  Q
    ||||||||||| |||||| | ||||||||||| |||||||     |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  28148 ttttgtgtttgttagttgctaggtttgattcatgatttttttttggtttctgattcatgaatgttgatgatggttatatgaagaagatgaagatgaggaa 28049  T
Q  615 gaag 618  Q
    ||||    
T  28048 gaag 28045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 614
Target Start/End: Complemental strand, 32416 - 32318
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaa 614  Q
    ||||||||||| |||||| ||||||||||||  |||||||    |||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  32416 ttttgtgtttgttagttgctgggtttgattcgtgatttttttgagtttctaattcatgaatgttgatgatggttatatgaagaagatgaagatgaggaa 32318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 513 - 617
Target Start/End: Complemental strand, 18655769 - 18655661
Alignment:
Q  513 agtttgattttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagat 608  Q
    |||||||||||||||||| |||||| |||||||||||||  ||||||    |||| || |||||||||||||||||   |||||||||||||||| ||||    
T  18655769 agtttgattttgtgtttgttagttgctgggtttgattcattatttttctgggtttgtggttcatgaatgttgatgatgattatatgaagaagatgaagat 18655670  T
Q  609 gaggaagaa 617  Q
    |||||||||    
T  18655669 gaggaagaa 18655661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 618
Target Start/End: Original strand, 18656496 - 18656602
Alignment:
Q  518 gattttgtgtttgctagttgttgggtttgattcaagattttt------gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgag 611  Q
    ||||||||||||| ||||||||| |||||||||| || ||||      |||| || |||||||||||| | ||  ||||||||||||||||| |||||||    
T  18656496 gattttgtgtttgttagttgttgagtttgattcatgagttttttttgggtttgtggttcatgaatgttaacgatggttatatgaagaagatgaagatgag 18656595  T
Q  612 gaagaag 618  Q
    |||||||    
T  18656596 gaagaag 18656602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 617
Target Start/End: Complemental strand, 9850223 - 9850174
Alignment:
Q  568 ttcatgaatgttgatgagagttatatgaagaagatggagatgaggaagaa 617  Q
    |||||||| ||||||||  ||||||||||||| ||| |||||||||||||    
T  9850223 ttcatgaaggttgatgatggttatatgaagaatatgaagatgaggaagaa 9850174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 514 - 617
Target Start/End: Complemental strand, 40321390 - 40321283
Alignment:
Q  514 gtttgattttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatg 609  Q
    ||||||||||||||||| |||||| |||||||||||||  ||||||    |||| || |||||||||||||||||   |||||||||||||||| |||||    
T  40321390 gtttgattttgtgtttgttagttgctgggtttgattcattatttttctgggtttgtggttcatgaatgttgatgatgattatatgaagaagatgaagatg 40321291  T
Q  610 aggaagaa 617  Q
    ||||||||    
T  40321290 aggaagaa 40321283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 618
Target Start/End: Original strand, 29103112 - 29103215
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagag-ttatatgaagaagatggagatgaggaa 614  Q
    ||||||||||| |||||||||||||||||||| |||||||    |||||| ||||||||||||||||||  | ||| |||||||| ||| ||||||||||    
T  29103112 ttttgtgtttgttagttgttgggtttgattcatgattttttggggtttctaattcatgaatgttgatgattgtttaaatgaagaatatgaagatgaggaa 29103211  T
Q  615 gaag 618  Q
    ||||    
T  29103212 gaag 29103215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 617
Target Start/End: Complemental strand, 35044941 - 35044834
Alignment:
Q  514 gtttgattttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatg 609  Q
    |||||||||||| |||| |||||| |||||||||||||  ||||||    |||| || || ||||||||||||||   |||||||||||||||| |||||    
T  35044941 gtttgattttgtatttgttagttgctgggtttgattcattatttttctgggtttgtggttgatgaatgttgatgatgattatatgaagaagatgaagatg 35044842  T
Q  610 aggaagaa 617  Q
    ||||||||    
T  35044841 aggaagaa 35044834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 514 - 618
Target Start/End: Complemental strand, 42520535 - 42520434
Alignment:
Q  514 gtttgattttgtgtttgctagttgttgggtttgattcaagatttttg--tttctgattcatgaatgttgatgagagttatatgaagaagatggagatgag 611  Q
    ||||||||||||||||| |||||| | |||||||||     || |||  ||||||||||||||||||||||||   ||||| |||||||||| |||||||    
T  42520535 gtttgattttgtgtttgttagttgcttggtttgatt-----ttcttgggtttctgattcatgaatgttgatgatgattatacgaagaagatgaagatgag 42520441  T
Q  612 gaagaag 618  Q
    |||||||    
T  42520440 gaagaag 42520434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 618
Target Start/End: Original strand, 35045692 - 35045797
Alignment:
Q  518 gattttgtgtttgctagttgttgggtttgattcaaga---tttttgt--ttctgattcatgaatgttgatgagagttatatgaagaagatggagatgagg 612  Q
    ||||||||||||| ||| || ||||||||||||| ||   |||||||  || || |||||||||||| | ||  ||||||||||||||||| ||||||||    
T  35045692 gattttgtgtttgttagctgctgggtttgattcatgagtttttttgtatttgtggttcatgaatgttaacgatggttatatgaagaagatgaagatgagg 35045791  T
Q  613 aagaag 618  Q
    ||||||    
T  35045792 aagaag 35045797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 561 - 616
Target Start/End: Complemental strand, 36584119 - 36584064
Alignment:
Q  561 tttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaaga 616  Q
    |||||||||||| |||||||||||  ||||||||||||||||| ||| ||||||||    
T  36584119 tttctgattcataaatgttgatgatggttatatgaagaagatgaagaagaggaaga 36584064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 618
Target Start/End: Original strand, 40322029 - 40322138
Alignment:
Q  518 gattttgtgtttgctagttgttgggtttgattcaagattttt---------gtttctgattcatgaatgttgatgagagttatatgaagaagatggagat 608  Q
    ||||||||||||| |||||| ||||||||||||| || ||||         |||| || |||||||||||| | ||  ||||||||||||||||| ||||    
T  40322029 gattttgtgtttgttagttgctgggtttgattcatgagtttttttttttgtgtttgtggttcatgaatgttaacgatggttatatgaagaagatgaagat 40322128  T
Q  609 gaggaagaag 618  Q
    ||||||||||    
T  40322129 gaggaagaag 40322138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 43703316 - 43703266
Alignment:
Q  568 ttcatgaatgttgatgagagttatatgaagaagatggagatgaggaagaag 618  Q
    |||||||| ||||||||   |||||||||||||||| ||||||||||||||    
T  43703316 ttcatgaacgttgatgatgattatatgaagaagatgaagatgaggaagaag 43703266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 618
Target Start/End: Original strand, 31205510 - 31205612
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaag 615  Q
    ||||||||||| |||||| ||||||||||||| |||||||    |||||||||||||||||||||||||  |||| |||| ||||||| | |||||||||    
T  31205510 ttttgtgtttgttagttgctgggtttgattcatgatttttctaggtttctgattcatgaatgttgatgatggttacatgaggaagatgaaaatgaggaag 31205609  T
Q  616 aag 618  Q
    |||    
T  31205610 aag 31205612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 617
Target Start/End: Original strand, 54823120 - 54823169
Alignment:
Q  568 ttcatgaatgttgatgagagttatatgaagaagatggagatgaggaagaa 617  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  54823120 ttcatgaatgttgatgatggttatatgaagaagatgaagatgaggaagaa 54823169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 617
Target Start/End: Original strand, 55387447 - 55387548
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaag 615  Q
    ||||||||||| |||||| ||||||||||||| |||||||    |||| || |||||||||||||||||   |||||||||||||||| |||||||||||    
T  55387447 ttttgtgtttgttagttgctgggtttgattcatgatttttctgggtttgtggttcatgaatgttgatgatgattatatgaagaagatgaagatgaggaag 55387546  T
Q  616 aa 617  Q
    ||    
T  55387547 aa 55387548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 603
Target Start/End: Original strand, 50003030 - 50003117
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatg 603  Q
    ||||||| ||| |||||||| |||||||||||||||||||    |||| || |||||||||||||||||  |||||||||||||||||    
T  50003030 ttttgtgcttgttagttgttaggtttgattcaagatttttctgagtttttggttcatgaatgttgatgatggttatatgaagaagatg 50003117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 618
Target Start/End: Complemental strand, 50002728 - 50002626
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaag 615  Q
    ||||| ||||| |||||| | ||||||||||| |||||||    |||| || |||||||||||||||||  ||||||||| ||||||| |||||| ||||    
T  50002728 ttttgggtttgttagttgctaggtttgattcatgatttttctgggtttttggttcatgaatgttgatgatggttatatgatgaagatgaagatgaagaag 50002629  T
Q  616 aag 618  Q
    |||    
T  50002628 aag 50002626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 55386698 - 55386648
Alignment:
Q  568 ttcatgaatgttgatgagagttatatgaagaagatggagatgaggaagaag 618  Q
    |||||||||||| ||||  ||||||||||||||||| ||||||||||||||    
T  55386698 ttcatgaatgttaatgatggttatatgaagaagatgaagatgaggaagaag 55386648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 618
Target Start/End: Original strand, 41766966 - 41767067
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatggagatgaggaag 615  Q
    ||||||||||| |||||||||| ||||||||| |||||||    |||| || || ||||||||||||||   |||||||||||||||| |||| ||||||    
T  41766966 ttttgtgtttgttagttgttgg-tttgattcatgatttttatgggtttatggttaatgaatgttgatgatgtttatatgaagaagatgaagataaggaag 41767064  T
Q  616 aag 618  Q
    |||    
T  41767065 aag 41767067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 559
Target Start/End: Complemental strand, 41766445 - 41766406
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt 559  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  41766445 ttttgtgtttgttagttgttgggtttgattcatgattttt 41766406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 43414854 - 43414804
Alignment:
Q  568 ttcatgaatgttgatgagagttatatgaagaagatggagatgaggaagaag 618  Q
    |||||||| ||||||||   |||||||||||||||| ||||||||||||||    
T  43414854 ttcatgaacgttgatgatgattatatgaagaagatgaagatgaggaagaag 43414804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 603
Target Start/End: Original strand, 43415769 - 43415856
Alignment:
Q  520 ttttgtgtttgctagttgttgggtttgattcaagattttt----gtttctgattcatgaatgttgatgagagttatatgaagaagatg 603  Q
    |||||| |||| ||||| ||| |||||||||| |||||||    |||| || || ||||||||||||||  |||||||||||||||||    
T  43415769 ttttgtatttgttagttcttgagtttgattcatgatttttctgggtttttggtttatgaatgttgatgatggttatatgaagaagatg 43415856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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