View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_8 (Length: 538)
Name: NF3728_low_8
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 30632979 - 30632481
Alignment:
| Q |
17 |
aggtgctaccccgactctctctaatgccatttctaatcctaccatgtttggtcttaccacacatcaacgcaacatctatcatgttgatttttatgcacca |
116 |
Q |
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| T |
30632979 |
aggtgctaccccgactctctctaatgccatttctaatcctaccatatttggtcttaccacacatcaatgcaacatctatcatgttgatttttatgcacca |
30632880 |
T |
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| Q |
117 |
acgtaatcaaataaaaatggcatgcactatctaccatatagatattttatgatataattttatttgatgcgtagttttagaaatacaaaaattgaatatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30632879 |
acgtaatcaaataaaaatggcatgcactatctaccatatagatattttatgatataattttatttgatgcgtagttttagaaatacaaaaattgaatatt |
30632780 |
T |
|
| Q |
217 |
actactaccatgaaaattgagaaatgaaatgtgaagaatgattgtacctgtgaggtcaccggtgatgaggacgagggaggggttgatgaaggaaagagcg |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30632779 |
actagtaccatgaaaattgagaaatgaaatgtgaaga-tgattgtacctgtgaggtcaccggtgatgaggacgagggaggggttgatgaaggaaagagcg |
30632681 |
T |
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| Q |
317 |
tgacccacaagattggtgaaatcaagggctctgtttggatgatgaacgctgagatgaagatcggaaagctgaacaacccaaacagctgagtcaggtgttc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30632680 |
tgacccacaagattggtgaaatcaagggctctgtttggatgatgaacgctgagatgaagatcggaaagctgaacaacccaaacagctgaatcaggtgttc |
30632581 |
T |
|
| Q |
417 |
cttttggctctatcactgtttctccattgcagcagtaaattccgaacgcaatcacgatggtggcgataaacaggttcatgctgctacagttttttctgtc |
516 |
Q |
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| T |
30632580 |
cttttggctctatcactgtttctccattgcagcagtaaattctgaacgcaatcacgatggtggcgataaacaggttcatgctgctacagttttttctgtc |
30632481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 28186971 - 28187008
Alignment:
| Q |
44 |
catttctaatcctaccatgtttggtcttaccacacatc |
81 |
Q |
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| T |
28186971 |
catttctaatcctaccatgtctagtcttaccacacatc |
28187008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 4440864 - 4440785
Alignment:
| Q |
17 |
aggtgctaccccgactctctctaa---tgccatttctaatcctaccatgtttggtcttaccacacatc-aacgcaacatc |
92 |
Q |
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||||||| |||| ||||||||||| ||||||| ||||||||| ||||| | |||||||||| |||| ||||||||||| |
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| T |
4440864 |
aggtgctgcccccactctctctaatggtgccattcctaatcctatcatgtctagtcttaccactcatcgaacgcaacatc |
4440785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 25967570 - 25967607
Alignment:
| Q |
44 |
catttctaatcctaccatgtttggtcttaccacacatc |
81 |
Q |
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| T |
25967570 |
catttctaatcctaccatgtctagtcttaccacacatc |
25967607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 33307155 - 33307088
Alignment:
| Q |
17 |
aggtgctaccccgactctctctaatgc---catttctaatcctaccatgtttggtcttaccacacatc |
81 |
Q |
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|||||||||||| ||||||||||||| | ||||||||| || ||||||| ||||||||||||||| |
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| T |
33307155 |
aggtgctaccccaactctctctaatgttgtcgtttctaatcttatcatgtttagtcttaccacacatc |
33307088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 8671929 - 8671850
Alignment:
| Q |
17 |
aggtgctaccccgactctctctaa---tgccatttctaatcctaccatgtttggtcttaccacacat-caacgcaacatc |
92 |
Q |
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|||||||||||| ||||||||||| || |||| ||||||||| ||||| | |||||||||| ||| |||||||||||| |
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| T |
8671929 |
aggtgctacccccactctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatc |
8671850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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