View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_low_9 (Length: 527)
Name: NF3728_low_9
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Complemental strand, 34336365 - 34335855
Alignment:
| Q |
15 |
cataggtggtgaaaaagggcatttcattttatctttgtaggctagaaatgcccaatacagaggagattctgaagtgtgggggaccaagaagtgtttctgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34336365 |
cataggtggtgaaaaagggcatttcattttatctttgtaggctagaaatgcccaatacagaggagattatgaagtgtgggggaccaagaagtgtttctgt |
34336266 |
T |
|
| Q |
115 |
tcctgttcactaannnnnnnactactttgtatgatgatgatgatgtggaaaccactttaatttacttctactgtgtacagataaagcttttttgtccgtt |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336265 |
tcctgttcactaatttttttactactttgtatgatgatgatgatgtggaaaccactttaatttacttctactgtgtacagataaagcttttttgtccgtt |
34336166 |
T |
|
| Q |
215 |
accaatcctcttgttttttcttcaaaaaagagtgtcatttcctcaatggaatttaagaatcttgcctaataattctgttttaggatgttaggtttttcat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336165 |
accaatcctcttgttttttcttcaaaaaagagtgtcatttcctcagtggaatttaagaatcttgcctaataattctgttttaggatgttaggtttttcat |
34336066 |
T |
|
| Q |
315 |
tgttcagttctgtcatttcactcatttggctcttgtgcaaaagaaatactattagaagaagtactcaagagttaaaaatgttttatctaaatatttaatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336065 |
tgttcagttctgtcatttcactcatttggctcttgtgcaaaagaaatactattagaagaagtactcaagagttaaaaatgttttatctaaatatttaatt |
34335966 |
T |
|
| Q |
415 |
gtattttaataacatacttatttaataaaataacttgtttttatgagacacccccattaaatcaaaatgaagcttaaagactaaagaggaacaatgagat |
514 |
Q |
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| T |
34335965 |
gtattttaataacatacttatttaataaaataacttgtttttatgagacacccccattacatcaaaatgaagcttaaagactaaagaggaacaatgagat |
34335866 |
T |
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| Q |
515 |
tgaagaatgat |
525 |
Q |
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||||||||||| |
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| T |
34335865 |
tgaagaatgat |
34335855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 34840514 - 34840611
Alignment:
| Q |
148 |
atgatgatgatgtggaaaccactttaatttacttctactgtgtacagataaagcttttttgtccgttaccaatcctcttgttttttcttcaaaaaagagt |
247 |
Q |
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||||| ||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34840514 |
atgattatgatgtggaaacca-tttaagttactactactgt--acagataaagcttttttgtccgttaccaatcctcttgttttttcttcaaaaaagagt |
34840610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 34840675 - 34840709
Alignment:
| Q |
50 |
tgtaggctagaaatgcccaatacagaggagattct |
84 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
34840675 |
tgtaggctacaaatgcccaatacagaggagattct |
34840709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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