View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_high_17 (Length: 234)
Name: NF3729_high_17
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 55004710 - 55004899
Alignment:
| Q |
28 |
aaggtgttattggtttcatgaatatttggaaccaaatcaaatcaacaaaattctgacacaacaaggcaattaaccaacaaaataatggcaataaagaatg |
127 |
Q |
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| T |
55004710 |
aaggtgttattggtttcatgaatatttggaaccaaatcaaatcaacaaaattctgacacaacaaggcaattaaccaacaaaataatggcaataaagaatg |
55004809 |
T |
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| Q |
128 |
gaaaaagaataagccaacacaaaatttacatggttttcagtcaagagacctactcacttggggatttggattctatccattgagatttct |
217 |
Q |
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| T |
55004810 |
gaaaaagaataagccaacacaaaatttacatggttttcagtcaagagacctactcattgggggatttggattctcaccattcagatttct |
55004899 |
T |
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