View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_high_18 (Length: 205)
Name: NF3729_high_18
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35376563 - 35376752
Alignment:
| Q |
1 |
gcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagc |
100 |
Q |
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| T |
35376563 |
gcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagc |
35376662 |
T |
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| Q |
101 |
tctcacgagttccacatcacaatcaccatttctacttctcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaag |
190 |
Q |
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| T |
35376663 |
tctcacgagttccacatcacaatcaccatttctacttctcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaag |
35376752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35357985 - 35358174
Alignment:
| Q |
1 |
gcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagc |
100 |
Q |
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| T |
35357985 |
gcattttatgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagc |
35358084 |
T |
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| Q |
101 |
tctcacgagttccacatcacaatcaccatttctacttctcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaag |
190 |
Q |
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| T |
35358085 |
tctcatgagttccgcatcacaatcaccatttctacttttcaaggctaactcagcaggtgcacaccccattggtcctgtgcccgtaacaag |
35358174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 35365038 - 35365145
Alignment:
| Q |
20 |
agcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagctctcacgagttccacatca |
119 |
Q |
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| T |
35365038 |
agcaatgaagacatcagcaccaatctctgtgttgagttctttgatcatttcgacaaattgtcgatcatataaagaggcagcactcacgagttcaacatca |
35365137 |
T |
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| Q |
120 |
caatcacc |
127 |
Q |
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| T |
35365138 |
caatcacc |
35365145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 48084999 - 48084817
Alignment:
| Q |
11 |
tgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagctctcacgagt |
110 |
Q |
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||||| |||||||| |||| ||||| ||||||||| ||| ||| | ||||||| || |||||||| ||||| |||||||| ||||||||| | ||| |
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| T |
48084999 |
tgcatcagcagcaacaaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaggatgcagctctctcaagt |
48084900 |
T |
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| Q |
111 |
tccacatcacaatcaccatttctacttc---tcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaag |
190 |
Q |
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| T |
48084899 |
tccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaag |
48084817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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