View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3729_high_5 (Length: 378)
Name: NF3729_high_5
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_high_5 |
 | |
|
| [»] scaffold0771 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 54618896 - 54619120
Alignment:
| Q |
19 |
atgaacacaatttttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgct |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54618896 |
atgaacacaatctttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgct |
54618995 |
T |
|
| Q |
119 |
gaaccgtgaaagcgatagccctcgcaccccagtcgcctcctacaacaaccaattggacctaacacacgttttggccaaacacaagggcaggggcggaggg |
218 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
54618996 |
gaaccgtgacagcga---ccctcgcaccccagtcgcctcctacaacaaccaattggacctaacacacgttttgaccaaacacaagggcaggggcagaggg |
54619092 |
T |
|
| Q |
219 |
agcttcactacaatagcttacctcccct |
246 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
54619093 |
agcttcactgcaatagcttacctcccct |
54619120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 371
Target Start/End: Original strand, 54619520 - 54619648
Alignment:
| Q |
239 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtttgttgtatgattcaacttatttcatctgcat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54619520 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtctgttgtatgattcaacttatttcatctgcat |
54619619 |
T |
|
| Q |
339 |
tagtccaccctcaccttagattgagtattatct |
371 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |
|
|
| T |
54619620 |
tagtccacc----cctcagattgagtattatct |
54619648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 13951107 - 13951061
Alignment:
| Q |
176 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
222 |
Q |
| |
|
|||||||||||||| || ||||| |||||| |||||||||||||||| |
|
|
| T |
13951107 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
13951061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 3247 - 3201
Alignment:
| Q |
176 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
222 |
Q |
| |
|
|||||||||||||| || ||||| |||||| |||||||||||||||| |
|
|
| T |
3247 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
3201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 6938345 - 6938287
Alignment:
| Q |
168 |
caattggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttcac |
226 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||||| || ||||||| ||||| |
|
|
| T |
6938345 |
caattgggactaacacacgtttgggccaaactcaagggcaggagcagagggagtttcac |
6938287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 39129349 - 39129296
Alignment:
| Q |
171 |
ttggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttc |
224 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
39129349 |
ttgggcctaacacacgtttgacccaaacacaagggcatgggtggagggagcttc |
39129296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 2697854 - 2697802
Alignment:
| Q |
178 |
taacacacgttttggccaaacacaagggcaggggcggagggagcttcactaca |
230 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
2697854 |
taacacatgtttgggccaaatgcaaggtcagggacggagggagcttcactaca |
2697802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 29663197 - 29663225
Alignment:
| Q |
200 |
caagggcaggggcggagggagcttcacta |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29663197 |
caagggcaggggcggagggagcttcacta |
29663225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University