View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_low_1 (Length: 583)
Name: NF3729_low_1
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 38 - 574
Target Start/End: Original strand, 53501198 - 53501739
Alignment:
| Q |
38 |
tgttttgttcaatatgcagtggcggtggtgaaacgtcttaaagttaagggagttattagcttagctggaattgttttatgcttggttggcactctctcac |
137 |
Q |
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| T |
53501198 |
tgttttgttcaatatgcagtggcggtggtgaaacgtcttaaagttaagggagttattagcttagctggaattgtttgatgcttggttggcactctctcac |
53501297 |
T |
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| Q |
138 |
acccaatagatggagttggagtgactttaatttttactact----tgacaacaacttttaactcaaactctgttcataattaatgaaaaagacaacaacc |
233 |
Q |
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| T |
53501298 |
acccaatagatggagttggagtgactttaatttttactactcccttgacaacaacttttaactcaaactctgttcataattaatgaaaaagacaacaacc |
53501397 |
T |
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| Q |
234 |
gcgtaaaagattttatgnnnnnnngacaataccgcctgtcaattggacacattttattgatgtacataaataaacgcggcaactgtgtccagcttcttgg |
333 |
Q |
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| T |
53501398 |
gcgtaaaagattttatgtttttttgacaataccgcctgtcaattggacacattttattgatgtacataaataaacgcggcaactgtgtccagcttcttgg |
53501497 |
T |
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| Q |
334 |
ctctttcaaatttctcataattattatcatcactaacggttcaatattcattttataaatagcaacattcacccttctttatcattcacttctaaac-tt |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53501498 |
ctctttcaaatttctcataattattatcatcactaacggttcaatatttattttataaatagcaacattcacccttctttatcattcacttctaaacttt |
53501597 |
T |
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| Q |
433 |
ctaatttaacaaagactatcactccctactactatcaactttcaaacacttcattatagagatggtttcttcaaatgatttcaacatgttaattctaatt |
532 |
Q |
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| T |
53501598 |
ctaatttaacaaagactatcactccctactactatcaactttcaaacacttcattatagagatggtttcttcaaatgatttcaacatgttaattctaatt |
53501697 |
T |
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| Q |
533 |
cctcttcttgttagctccctaatggtaatgaatgcctttgct |
574 |
Q |
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| T |
53501698 |
cctcttcttgttagctccctaatggtaatgaatgcctttgct |
53501739 |
T |
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