View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_low_13 (Length: 249)
Name: NF3729_low_13
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4522015 - 4521779
Alignment:
| Q |
1 |
ttcaaaatcaactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttggattgactttgagcttatctacta |
100 |
Q |
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| T |
4522015 |
ttcaaagtcaactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttggattgactttgagcttatctactg |
4521916 |
T |
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| Q |
101 |
gtatgatatcttatgagactttgaaagaacttatgacatgtgtataagcaatttttataatgtatttctatacgctctataggatagcttacgataactt |
200 |
Q |
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| T |
4521915 |
gtatgataacttatgagactttgaaataacttatgacatgtgtataagcaatttt--taatgtatttctatacgctctataggatagcttacgataactt |
4521818 |
T |
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| Q |
201 |
attgtacatgaagacaatttgacattttttaatcctttg |
239 |
Q |
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| T |
4521817 |
attgtacatgaagacaatttgacattttttaatcctttg |
4521779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 4511241 - 4511172
Alignment:
| Q |
9 |
caactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttgga |
78 |
Q |
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||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
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| T |
4511241 |
caactatacgaatatctcaaacaacttccttatttttcattttcttgtcattattttgggtcagtttgga |
4511172 |
T |
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