View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3729_low_17 (Length: 235)

Name: NF3729_low_17

Description: NF3729

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3729_low_17

[»] chr2 (5 HSPs)

Alignment Details

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 5)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 182; E-Value: 2e-98

Query Start/End: Original strand, 19 - 235

Target Start/End: Original strand, 11663241 - 11663457

Alignment:

Q	19	cgaaagtattggaattctagccgtctgtatagcttcttaatgtcatgatatactctcctctatgcctataaaaggcaatgctcttgcaatgttattctca	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11663241	cgaaagtattggaattctagccgtctgtatagcttcttcatgtcatgatatactctcctctatgcctataaaaggcaatgctcttgcaatgttattctca	11663340	T

Q	119	ctcattcaacagtttccaatatctgtttgaatnnnnnnnnnctagaaaattatttcaatggctaaaatattagttcaaattttggtgtcaattttgcttg	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11663341	ctcattcaacagtttccaatatctgtttgaataaaaaaaaactagaaaattatttcaatggctaaaatattagttcaaattttggtgtcaattttgcttg	11663440	T

Q	219	tgctagtggcagtggaa	235	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	11663441	tgctaatggcagtggaa	11663457	T

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Target: chr2; HSP #2

Raw Score: 106; E-Value: 4e-53

Query Start/End: Original strand, 19 - 235

Target Start/End: Complemental strand, 7345228 - 7345010

Alignment:

Q	19	cgaaagtattggaattctagccgtctgtatagcttcttaatgtcatgatatactctcctctatgcctataaaaggcaatgctcttgcaatgttattctca	118	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	7345228	cgaaagttttggaattctagccgtctgtatagcttcttcatgtcacaatagattctcttctatgccaataaaaggcaatgctcttgcattgttattctca	7345129	T

Q	119	ctcattcaacagtttccaatatctgtttgaatnnnnnnnnnctagaaaattatttcaatggctaaaatattagttcaaattttggtgtc---aattttgc	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \| \|
T	7345128	ctcattcaacagtttccaatatctgtttgaat-aaaaaaaactagaaaatattttcaatggctaaattaatggttcaaactttggtgtcaataattctcc	7345030	T

Q	216	ttgtgctagtggcagtggaa	235	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7345029	ttgtgctagtggcagtggaa	7345010	T

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Target: chr2; HSP #3

Raw Score: 45; E-Value: 9e-17

Query Start/End: Original strand, 171 - 235

Target Start/End: Original strand, 11654013 - 11654077

Alignment:

Q	171	tttcaatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctagtggcagtggaa	235	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11654013	tttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaa	11654077	T

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Target: chr2; HSP #4

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 175 - 235

Target Start/End: Original strand, 11667782 - 11667842

Alignment:

Q	175	aatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctagtggcagtggaa	235	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11667782	aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaa	11667842	T

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Target: chr2; HSP #5

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 44 - 104

Target Start/End: Original strand, 11667656 - 11667715

Alignment:

Q	44	tgtatagcttcttaatgtcatgatatactctcctctatgcctataaaaggcaatgctcttg	104	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11667656	tgtatagcttcttcacgtcatgatagattctcttc-atgcctataaaaggcaatgctcttg	11667715	T

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