View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3729_low_19 (Length: 212)
Name: NF3729_low_19
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 28920736 - 28920546
Alignment:
| Q |
8 |
taccaatgatttaaaactacttaatatcttcatatagaaatattaaatcgttcgtaacaactttactttttcnnnnnnntgaaatttgaaatcttctata |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
28920736 |
taccaatgatttaaaactgcttaatatcttcatatagaaatattaaatcgttcgtaacaactttactttttcaaaaaaatgaaatatgaaatcttctatg |
28920637 |
T |
|
| Q |
108 |
atgacaataagggaactattaacatatgttagtacctttatattaatcagtgttaacttcaactttaaataggtcaagcagacaatatcct |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28920636 |
atgacaataagggaactattaacatatcttagtacctttatattaattagtgttaacttcaactttaaatagatcaagcagacaatatcct |
28920546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 28923840 - 28923966
Alignment:
| Q |
12 |
aatgatttaaaactacttaatatcttcatatagaaatattaaatcgttcgtaacaactttactttttcnnnnnnntgaaatttgaaatcttctataatga |
111 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||| | ||| |||||| ||||||||| || || |
|
|
| T |
28923840 |
aatgatgtaaaactgcttaatatctccatatagaagtattaaatcgtcagtaacaactttacatattcaaaataatgaaatcaaaaatcttctgtagaga |
28923939 |
T |
|
| Q |
112 |
caataagggaactattaacatatgtta |
138 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
28923940 |
caataaggaaactattaacatatgtta |
28923966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 28922067 - 28921979
Alignment:
| Q |
106 |
taatgacaataagggaactattaacatatgttagtacctttatattaatcagtgttaacttcaactttaaataggtcaagcagacaatatcct |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||| |||| ||| |||||| || |||||||||| |
|
|
| T |
28922067 |
taatgacaataaggggactattaacatatgttagtacctttatgtt----agggttaacttctacttgaaacaggtcactcaaacaatatcct |
28921979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 28923975 - 28924014
Alignment:
| Q |
159 |
gttaacttcaactttaaataggtcaagcagacaatatcct |
198 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
28923975 |
gttaacttctactttaaataggtcacgcagacaatatcct |
28924014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University