View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3729_low_2 (Length: 472)

Name: NF3729_low_2
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3729_low_2
NF3729_low_2
[»] chr7 (2 HSPs)
chr7 (123-456)||(44729349-44729677)
chr7 (1-59)||(44729226-44729284)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 123 - 456
Target Start/End: Original strand, 44729349 - 44729677
Alignment:
Q  123 gaatatgagtgcgtcctgaggatcttgagtttgaactcagaagtaaagcttgcaaagcgaagttatgcaatgaagcctgttccctttgcttgatgtcaat 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729349 gaatatgagtgcgtccggaggatcttgagtttgaactcagaagtaaagcttgcaaagcgaagttatgcaatgaagcctgttccctttgcttgatgtcaat 44729448  T
Q  223 gaacttggcgattaataaggctaaggaggattagaacattcttgtgttccttttacctttcttgagacaaaataataaaagagaagtagaaatagtgttg 322  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729449 gaacttggcaattaataaggctaaggaggattagaacattcttgtgttccttttacctttcttgagacaaaataataaaagagaagtagaaatagtgttg 44729548  T
Q  323 tcacaagtgattaaattaagctgtggctcattagagatatacagagaagaaagtgaagnnnnnnnnnncagaagtgccaatataacataactaacaatta 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  44729549 tcacaagtgattaaattaagctgtggctcattagagatatacagagaagaaagtgaa-----aaaaaacagaagtgccaatataacataactaacaatta 44729643  T
Q  423 aaaccaacttaaaccaacaactttcactaatttg 456  Q
    ||||||||||||||||||||||||||||||||||    
T  44729644 aaaccaacttaaaccaacaactttcactaatttg 44729677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44729226 - 44729284
Alignment:
Q  1 aaaggaatatgagtacatcccgagaatcttattagaaatatttgtggagaaataaagac 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729226 aaaggaatatgagtacatcccgagaatcttattagaaatatttgtggagaaataaagac 44729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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