View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_low_3 (Length: 390)
Name: NF3729_low_3
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 199 - 375
Target Start/End: Original strand, 23258522 - 23258699
Alignment:
| Q |
199 |
cacttggctcaaaatgaacaaggttattaaaatatcctctttctattttattttatttta--aggcatgttatcaaaatatctattgctgcgtcactata |
296 |
Q |
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| T |
23258522 |
cacttggctcaaaatgaacaaggttatcaaaatatcctctttctattttattttattttataaggcatgttatgaaaatatctac-gctgcgtcactata |
23258620 |
T |
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| Q |
297 |
caaggttattatatgattcagaggaatttactctttttggctctccatccctttcaaacccacatgttattgattgcgc |
375 |
Q |
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| T |
23258621 |
caaggttattatatgattcagaggaatttactatttttggctctccatccctttcaaacccacatgttactgattgcgc |
23258699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 23258345 - 23258399
Alignment:
| Q |
19 |
ggaagcatagttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
73 |
Q |
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| T |
23258345 |
ggaagcatagttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
23258399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 23258418 - 23258461
Alignment:
| Q |
94 |
agtgagctatttcccaagttggaggctttgtgattggttatcaa |
137 |
Q |
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| T |
23258418 |
agtgagctatttcccaagttggaggctgtgtgattggttatcaa |
23258461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 23266934 - 23266974
Alignment:
| Q |
97 |
gagctatttcccaagttggaggctttgtgattggttatcaa |
137 |
Q |
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| T |
23266934 |
gagctatttcctaagttggaggctttgtgattggttatcaa |
23266974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23247955 - 23247995
Alignment:
| Q |
19 |
ggaagcatagttgagtttgaaggaaagaataaggtaacagg |
59 |
Q |
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| T |
23247955 |
ggaagcattgttgtgtttgaaggaaagaataaggtaacagg |
23247995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23252367 - 23252407
Alignment:
| Q |
19 |
ggaagcatagttgagtttgaaggaaagaataaggtaacagg |
59 |
Q |
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| T |
23252367 |
ggaagcatagttgtgtttgaaggaaagaataaggcaacagg |
23252407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 23266860 - 23266911
Alignment:
| Q |
20 |
gaagcatagttgagtttgaaggaaagaataaggtaacaggtagagtatttgt |
71 |
Q |
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| T |
23266860 |
gaagcatacttggttttgaaggaaagaataaggtaacaggcagagtgtttgt |
23266911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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