View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3729_low_5 (Length: 378)
Name: NF3729_low_5
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 33827599 - 33827872
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33827599 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatatttagagttctattaat |
33827698 |
T |
|
| Q |
102 |
ttgatgctaatatttcttgttacctattaccttataataattctctgtctaatttttcctacaactttcacaaaactttaatggtgataagggtgctaat |
201 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33827699 |
ttgatgctaatatttcttattacttattaccttataatatttctctgtctaatttttcctacaactttcacaaaactttaatggtgataagggtgctaat |
33827798 |
T |
|
| Q |
202 |
taatttgatgaattcaattcatggtgatggtggtaaatgtgtgattcattcaaggctcatgagcacatatattt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33827799 |
taatttgatgaattcaattcatggtgatggtggtaaatgtgtgattcattcaaggctcatgagcacatatattt |
33827872 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 33827896 - 33827962
Alignment:
| Q |
303 |
aggggccaaggcctaacacatggggctgctcctgcttcgatatattttgatttatgtgtagtattat |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33827896 |
aggggccaaggcctaacacatggggctgctcctgcttcgatatattttgatttatgtgtagtattat |
33827962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 47833911 - 47834074
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaat |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
47833911 |
gtggcgaaatactcttaagcccaatgcttcatgcatgcctcagtcaataatcgataagtttacttgttctctattctattatatttagagatctattaat |
47834010 |
T |
|
| Q |
102 |
ttgatgctaatatttcttgttacctattaccttataataattctctgtctaatttttcctacaa |
165 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
47834011 |
ttgatgctaatatttctcgttacttattaccttataataattctatgtctactttttcctacaa |
47834074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 26310454 - 26310395
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagttta |
63 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||| |||||||||||||| ||||||||||| |
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|
| T |
26310454 |
gtggcaaaatactcttaagcctagtgcatc--gcaagcctcagtcaataatcgataagttta |
26310395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 353108 - 353264
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaat |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||| |||||||||| |
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|
| T |
353108 |
gtggcgaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtatttagaattctattaat |
353207 |
T |
|
| Q |
102 |
ttgatgctaatatttcttgttacctattaccttataataattctctgtctaattttt |
158 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
353208 |
ttgatgctaatatttcttgttgtttattaccttataataattctatgtctatttttt |
353264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 53837561 - 53837398
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaat |
101 |
Q |
| |
|
||||| ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53837561 |
gtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctattatgtttagagttctattaat |
53837462 |
T |
|
| Q |
102 |
ttgatgctaatatttcttgttacctattaccttataataattctctgtctaatttttcctacaa |
165 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| | |||||| ||| |||||||| |
|
|
| T |
53837461 |
ttgatgctaatatttcttattgcttattaccttataataattttatgtctactttctcctacaa |
53837398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 53833962 - 53833815
Alignment:
| Q |
3 |
tggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatt |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
53833962 |
tggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagtttagttgttctctattatattatatttagagttctattaatt |
53833863 |
T |
|
| Q |
103 |
tgatgctaatatttcttgttacctattaccttataataattctctgtc |
150 |
Q |
| |
|
||||| ||||||||||| || | |||||||||||||||||||| |||| |
|
|
| T |
53833862 |
tgatgttaatatttcttattgcttattaccttataataattctatgtc |
53833815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7909583 - 7909524
Alignment:
| Q |
1 |
agtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagttt |
62 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||||||||||||| | |||||||| |
|
|
| T |
7909583 |
agtggcaaaatactcttaagcccaatgcat--tgcacgcctcagtcaataatcaataagttt |
7909524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 24734322 - 24734262
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagttt |
62 |
Q |
| |
|
||||| || |||||||||| | ||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
24734322 |
gtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttt |
24734262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 27648486 - 27648594
Alignment:
| Q |
35 |
cacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatttgatgctaatatttcttgttacctattacctt |
134 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
27648486 |
cacgcctcaatcaataatcgataagtttacttgttctctattctattatatttagagctctattaatttgatgctaatatttcttgttacttattacctt |
27648585 |
T |
|
| Q |
135 |
ataataatt |
143 |
Q |
| |
|
||||||||| |
|
|
| T |
27648586 |
ataataatt |
27648594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 36338965 - 36338824
Alignment:
| Q |
3 |
tggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatatttagagttctattaatt |
102 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
36338965 |
tggcgaaatactcttaaacc-agtgcttcgtgcacgcctcagtcaatattcgataagtttacatattctctattctattgtatttagagttctattaatt |
36338867 |
T |
|
| Q |
103 |
tgatgctaatatttcttgttacctattaccttataataattct |
145 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
36338866 |
tgatgctaataattcttgctgtctattaccttataataattct |
36338824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 44686191 - 44686131
Alignment:
| Q |
2 |
gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagttt |
62 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||| |||||||||||||| ||| |||||| |
|
|
| T |
44686191 |
gtggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttt |
44686131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 54572968 - 54573047
Alignment:
| Q |
8 |
aaatactcttaagcccagtgcttcgtgcacgcctcagtcaataaccgataagtttacttgttctctattctattatattt |
87 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
54572968 |
aaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt |
54573047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 54573488 - 54573544
Alignment:
| Q |
109 |
taatatttcttgttacctat-taccttataataattctctgtctaatttttcctaca |
164 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
54573488 |
taatattttttgttatttatgtaccttataataattctatgtctaaattttcctaca |
54573544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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