View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_low_8 (Length: 300)
Name: NF3729_low_8
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 39418485 - 39418760
Alignment:
| Q |
19 |
accaggggtatattgtgcagaagaggatccagctccaggaattaaagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttaccctt |
118 |
Q |
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| T |
39418485 |
accaggggtatattgtgcagaagaggatccagctccaggaattaaagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttaccctt |
39418584 |
T |
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| Q |
119 |
tgaactagaaattcctaaaaccacaaaatnnnnnnn------catgttaggtttaaaacattattgataatttgtttgatactatgttgtcaaatttagg |
212 |
Q |
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| T |
39418585 |
tgaactagaaattcctaaaatcacaaaaaaaaaaaaaaaaaacatgttagttttaaaacattattgataatttgtttgatactatgttgtgaaatttagg |
39418684 |
T |
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| Q |
213 |
acctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctccta |
288 |
Q |
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| T |
39418685 |
acctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctccta |
39418760 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 44512079 - 44512021
Alignment:
| Q |
204 |
aaatttaggacctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaa |
262 |
Q |
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| T |
44512079 |
aaattttggaccttagaaaggagtatccttgctccagcatgtttgttatcccatccaaa |
44512021 |
T |
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