View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3729_low_9 (Length: 296)
Name: NF3729_low_9
Description: NF3729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3729_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 39418746 - 39418904
Alignment:
| Q |
1 |
actctgctgctcctaggatttgaccattaacttgaatgtaatttaggtacattggattctttgtagctttgtgtaaccaagcagcaccccacaacaactc |
100 |
Q |
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| T |
39418746 |
actctgctgctcctaggatttgaccattaacttgaatgtaatttaggtacattggattctttgtggctttgtgtaaccaagcagcaccccacaacaactc |
39418845 |
T |
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| Q |
101 |
atcctaacaagtcattacaaacccatcagtcaaaagtactataattttgagtatgactc |
159 |
Q |
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| T |
39418846 |
atcctaacaagtcattacaaacccatcagtcaaaagtactataattttgagtatgactc |
39418904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 39418950 - 39419027
Alignment:
| Q |
205 |
ctttacctgataaccagagtaatcacagtaaaagggacacacaaagggttttaagacattgctgtaaggtcctctgtg |
282 |
Q |
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| T |
39418950 |
ctttacctgataaccagagtaatcccagtaaaagggacacacaaagggttttaagacattgctgtaaggtcctctgtg |
39419027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 44511986 - 44511906
Alignment:
| Q |
24 |
ccattaacttgaatgtaatttaggtacattggattctttgtagctttgtgtaaccaagcagcaccccacaacaactcatcc |
104 |
Q |
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|||||||| | |||||| |||| ||||||| | ||||| || || ||||| | |||||||||||||||||||||||||||| |
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| T |
44511986 |
ccattaaccttaatgtagtttaagtacattaggttcttagtggccttgtgaagccaagcagcaccccacaacaactcatcc |
44511906 |
T |
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