View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_12 (Length: 326)
Name: NF3731_high_12
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 50253417 - 50253718
Alignment:
| Q |
16 |
aaaaatgcagagaaaattcgatcatgcgtagtaaattagaaagtagcgtttcgttccttctctctagagcaattgtttttgttggataaaacaacacttc |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50253417 |
aaaaatgcaaagaaaattcgatcatgcgtagtaaattagaaagtagtgtttcgttccttctctctagagcaattgtttttgttggataaaacaacacttc |
50253516 |
T |
|
| Q |
116 |
gcttccaacaccgctttgcttggtttcaatattaaaaattctttctacacattgatgcacactttagagtataaattgttctcatatggctatgctcggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50253517 |
gcttccaacaccgctttgcttggtttcaatattaaaaattctttctacacattgatgcacactttagagtataaattgttctcatatggctatgctcggt |
50253616 |
T |
|
| Q |
216 |
tggtaagaaacatgtggccatgttacgacaatgtcaatagtgaaagaaactcccagagcttttctatataaagaaacatcaaagcttatccattagtata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50253617 |
tggtaagaaacatgtggccatgttacgacaatgtcaatagtgaaagaaactcccagagcttttctatataaagaaacatcaaagcttatccattagtata |
50253716 |
T |
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| Q |
316 |
at |
317 |
Q |
| |
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|| |
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| T |
50253717 |
at |
50253718 |
T |
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