View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_13 (Length: 326)
Name: NF3731_high_13
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 41067419 - 41067539
Alignment:
| Q |
12 |
cataggggaatatgattatcaaaatcattgtgaaatctgatcataacacaaaaaagaattacaaaaaattggttaaacacattgcactaggttatgtttt |
111 |
Q |
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| T |
41067419 |
cataggggaatatgattatcaaaatcattgtgaaatctgatcataacacaaaaaagaattacaaaaaattggttaaaaacattgcactaggttatgtttt |
41067518 |
T |
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| Q |
112 |
tataacattatcattgtttgt |
132 |
Q |
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| T |
41067519 |
tataacattatcattgtttgt |
41067539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 41067612 - 41067718
Alignment:
| Q |
207 |
ggcaagaataggttcattgtattggttaaatcatcattatggctaagaaatgataaaggaaaaaacgagcttgaagatgaataaaaccttggggttgaag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41067612 |
ggcaagaataggttcattgtattggttaaatcatcattatggctaagaaatgataaaggaaaaaacgagcttgaagatgaataaaaccttggggttgaag |
41067711 |
T |
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| Q |
307 |
aaaaaac |
313 |
Q |
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||||||| |
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| T |
41067712 |
aaaaaac |
41067718 |
T |
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