View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_14 (Length: 318)
Name: NF3731_high_14
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 10204573 - 10204867
Alignment:
| Q |
11 |
cacagacaacacaatgaatgcatataaaaaactatattctatagcatagcagcaatgcagcattattatcaaaaacaaggatataataaaatgattctcg |
110 |
Q |
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| T |
10204573 |
cacaaacaacacaatgaatgcatataaaaaactatattctatagcatagcagcaatgcagcattattatcaaaaacaaggatataataaaatgattctcg |
10204672 |
T |
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| Q |
111 |
tagtgtggatgtccacgaactatttnnnnnnn---tagaaggatatacaatatttatgaatttacaaaaacattgtcatgcttaagatatactacgatct |
207 |
Q |
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| T |
10204673 |
tagtgtggatgtccacgaactatttaaaaaaaaaatagaaggatatacaatatttatgaacttacaaaaacattgtcatgcttaagatatactacgatct |
10204772 |
T |
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| Q |
208 |
ttaaagataagtgttggaaatcgtttcgtcaaaataacgcaattcggtattaattatcggtcaataaaaattgacagttttggcacatatataat |
302 |
Q |
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| T |
10204773 |
ttaaagataagtgttggaaatcgttgcgtcaaaataacgcaattcggtattacttatcggtcaataaaaattgacagttttggcacatacataat |
10204867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 9967987 - 9968076
Alignment:
| Q |
206 |
ctttaaagataagtgttggaaatcgtttcgtcaaaataacgcaattcggtattaattatcggtcaataaaaattgacagttttggcacata |
296 |
Q |
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| T |
9967987 |
ctttaaagataagtattgaaaattgtg-cgtcaaagtaacgcaactcattattaattatcggtcaataacaattgacggttttggtacata |
9968076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 9967832 - 9967887
Alignment:
| Q |
234 |
cgtcaaaataacgcaattcggtattaattatcggtcaataaaaattgacagttttgg |
290 |
Q |
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| T |
9967832 |
cgtcaaaataacacaactcgttat-aattatcggtcaataaaaattgacagttttgg |
9967887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 9968175 - 9968270
Alignment:
| Q |
206 |
ctttaaagataagtgttggaaatcgtttcgtcaaaataacgcaattcggtattaattatcggtcaataaaaattgacagttttggcacatatataat |
302 |
Q |
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| T |
9968175 |
ctttaaagataagaattggaaattgtg-cgtcaaagtaacgcaactcgttattaactatcggtcaataaaaactgacaactttggtacatacataat |
9968270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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