View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3731_high_15 (Length: 296)
Name: NF3731_high_15
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 32164562 - 32164820
Alignment:
| Q |
22 |
gccgatcagacaatatctcccgatatattttatgcaatcggacctctgtcggaatggcactagttagcttctccaaagaagcaccatctttttcttaatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32164562 |
gccgatcagacaatatctcccgatatattttatgcaatcggacctctgtcggaatggcacaagttagcttctccaaaggagcaccatctttttcttaatc |
32164661 |
T |
|
| Q |
122 |
tcttcttgatcgacaccaactagtttctccaattgagcaccatcctataagttttgtttggcaatgaagtggaaaaaacatagctgatgtattatcctgc |
221 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164662 |
tcttcttgatcgacgccaactagtttctccaattgagcaccatcctataagttttgtttggcaatgaagtggaaaaaacatagctgatgtattatcctgc |
32164761 |
T |
|
| Q |
222 |
agtagccagaataaagagaggtgagattctttcatggcagaaacttcaaaccaagtatt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32164762 |
agtagccagaataaagagaggtgagattctttcatggcagaaatttcaaaccaagtatt |
32164820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 1833606 - 1833669
Alignment:
| Q |
173 |
ttttgtttggcaatgaagtggaaaaaacatagctgatgtattatcctgcagtagccagaataaa |
236 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
1833606 |
ttttttttggcaatgaagtagaaaatacatagctgatgtagtgtcctgcagtagccataataaa |
1833669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 11343850 - 11343795
Alignment:
| Q |
178 |
tttggcaatgaagtggaaaaaacatagctgatgtattatcctgcagtagccagaat |
233 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
11343850 |
tttggcaatgaagcagaaaacacatagctgatgtattgtcctgcagtagccagaat |
11343795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University