View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_18 (Length: 282)
Name: NF3731_high_18
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 35568179 - 35567918
Alignment:
| Q |
6 |
cagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaagggcacctcatgctaagaaagtgatgggaattgatgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35568179 |
cagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaagggcacctcatgctaagaaggtgatgggaattgatgt |
35568080 |
T |
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| Q |
106 |
tgttatatggtgggataggaatgagagtgcatggcaagtttttgatgatgcttgtcctcatagattagcacctttgtctgaaggaaggattgatcaatgg |
205 |
Q |
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| T |
35568079 |
tgttatatggtgggataggaatgagagtgcatggcaagtttttgatgatgcttgtcctcatagattagcacctttgtctgaaggaaggattgatcaatgg |
35567980 |
T |
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| Q |
206 |
ggtaggttacagtgtgtctatcatggttggtgttttaatggatcaggtgattgcaagttcat |
267 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35567979 |
ggtaggttacagtgtgtgtatcatggttggtgttttaatggatcaggtgattgcaagttcat |
35567918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 35582910 - 35582649
Alignment:
| Q |
6 |
cagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaagggcacctcatgctaagaaagtgatgggaattgatgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35582910 |
cagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaagggcacctcatgctaagaaggtgatgggaattgatgt |
35582811 |
T |
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| Q |
106 |
tgttatatggtgggataggaatgagagtgcatggcaagtttttgatgatgcttgtcctcatagattagcacctttgtctgaaggaaggattgatcaatgg |
205 |
Q |
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| T |
35582810 |
tgttatatggtgggataggaatgagagtgcatggcaagtttttgatgatgcttgtcctcatagattagcacctttgtctgaaggaaggattgatcaatgg |
35582711 |
T |
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| Q |
206 |
ggtaggttacagtgtgtctatcatggttggtgttttaatggatcaggtgattgcaagttcat |
267 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35582710 |
ggtaggttacagtgtgtgtatcatggttggtgttttaatggatcaggtgattgcaagttcat |
35582649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 35594086 - 35593825
Alignment:
| Q |
6 |
cagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaagggcacctcatgctaagaaagtgatgggaattgatgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35594086 |
cagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaagggcacctcatgctaagaaggtgatgggaattgatgt |
35593987 |
T |
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| Q |
106 |
tgttatatggtgggataggaatgagagtgcatggcaagtttttgatgatgcttgtcctcatagattagcacctttgtctgaaggaaggattgatcaatgg |
205 |
Q |
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| T |
35593986 |
tgttatatggtgggataggaatgagagcgcatggcaagtttttgatgatgcttgtcctcatagattagcacctttgtctgaaggaaggattgatcaatgg |
35593887 |
T |
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| Q |
206 |
ggtaggttacagtgtgtctatcatggttggtgttttaatggatcaggtgattgcaagttcat |
267 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35593886 |
ggtaggttacagtgtgtgtatcatggttggtgttttaatggatcaggtgattgcaagttcat |
35593825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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